CuGenDBv2

Gene ID	HG10017309
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	kinetochore protein SPC24 homolog
Genome location	Chr03:12999925..13000385
RNA-Seq Expression	HG10017309
Synteny	HG10017309
Gene Ontology terms	GO:0051983 - regulation of chromosome segregation (biological process)
InterPro domains	IPR044951 - Kinetochore protein SPC24-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037730.1 uncharacterized protein E6C27_scaffold141G00230 [Cucumis melo var. makuwa]

2.0e-41

85.05

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Query:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDFA+ S+IEE  SFADDLV +LKDP DV  LNQCLEHFK LQSSCDDDF+SVQS V+DYE KIKACR+KTEEAKANTVADDEMEILEKELEEEVGKGH
Subjt:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

XP_004148609.1 kinetochore protein SPC24 homolog [Cucumis sativus]

4.5e-41

83.18

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Query:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDFA+ S+IEE  SFADDLV +LKDP DV+ LNQCLEHFK LQSSCDDDF+SVQS ++DYE KIKACR+KTEEAKANTVADDEMEILEKELEEE+GKGH
Subjt:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

XP_008464222.1 PREDICTED: uncharacterized protein LOC103502153 [Cucumis melo]

2.0e-41

85.05

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Query:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDFA+ S+IEE  SFADDLV +LKDP DV  LNQCLEHFK LQSSCDDDF+SVQS V+DYE KIKACR+KTEEAKANTVADDEMEILEKELEEEVGKGH
Subjt:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

XP_022978290.1 uncharacterized protein LOC111478320 [Cucurbita maxima]

1.7e-35

77.57

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Query:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        M DFA K +IEE +S+ DDLV LL D  DVQTLNQCLEHFK LQSSC DDFS+VQS VQDYE KI+ACRQKTEEAKA+TVADDE++ILEKEL EE+GKG+
Subjt:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

XP_038883770.1 kinetochore protein SPC24 homolog [Benincasa hispida]

6.3e-43

88.79

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Query:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDF S+S+IE FISFADDLV LLKDP DVQ LNQCLEHFKALQSSCDDDFSSVQSLVQDYE KIKAC+QKTEEAKANTV DDEM ILEKEL+EEVGKGH
Subjt:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L002 Uncharacterized protein

2.2e-41

83.18

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Query:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDFA+ S+IEE  SFADDLV +LKDP DV+ LNQCLEHFK LQSSCDDDF+SVQS ++DYE KIKACR+KTEEAKANTVADDEMEILEKELEEE+GKGH
Subjt:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

A0A1S3CKZ4 uncharacterized protein LOC103502153

9.8e-42

85.05

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Query:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDFA+ S+IEE  SFADDLV +LKDP DV  LNQCLEHFK LQSSCDDDF+SVQS V+DYE KIKACR+KTEEAKANTVADDEMEILEKELEEEVGKGH
Subjt:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

A0A5D3CGK0 Uncharacterized protein

9.8e-42

85.05

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Query:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MGDFA+ S+IEE  SFADDLV +LKDP DV  LNQCLEHFK LQSSCDDDF+SVQS V+DYE KIKACR+KTEEAKANTVADDEMEILEKELEEEVGKGH
Subjt:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

A0A6J1GFS1 uncharacterized protein LOC111453528

1.2e-34

74.77

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Query:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        M DFA K +IEE +S+ DDLV LL D  DVQTLNQCLEHFK LQSSC DDFS+VQS VQDYE KI+ACRQKTEEA+ +TV+DDE++ILEKEL EE+GKG+
Subjt:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

A0A6J1IPN8 uncharacterized protein LOC111478320

8.0e-36

77.57

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Query:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        M DFA K +IEE +S+ DDLV LL D  DVQTLNQCLEHFK LQSSC DDFS+VQS VQDYE KI+ACRQKTEEAKA+TVADDE++ILEKEL EE+GKG+
Subjt:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIR
        LLMEEIR
Subjt:  LLMEEIR

SwissProt top hits

e value

%identity

Alignment

Q67XT3 Kinetochore protein SPC24 homolog

4.0e-16

40.19

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Query:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MG+ +   DIE+ +S+ DDL+ LL        ++Q  E FKAL  +C +DF+ +Q  ++D + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +  
Subjt:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIR
         L +E+R
Subjt:  LLMEEIR

Arabidopsis top hits

e value

%identity

Alignment

AT3G08880.1 unknown protein

2.8e-17

40.19

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Query:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH
        MG+ +   DIE+ +S+ DDL+ LL        ++Q  E FKAL  +C +DF+ +Q  ++D + K+ AC++KTEEA ++  A+DE+E L+KEL+EE+ +  
Subjt:  MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGH

Query:  LLMEEIR
         L +E+R
Subjt:  LLMEEIR

AT5G01570.1 unknown protein

9.4e-13

37.37

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Query:  DIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR
        + E  IS+ D+L+ +L D      L Q LE  +A+  SCD+DF  +   +QD + K+  C++KT+EA +    ++E+E L+KEL+EE+     L EE+R
Subjt:  DIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR

Sequences

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CDS sequence

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ATGGGAGATTTTGCCTCAAAGTCCGACATCGAGGAGTTCATATCTTTTGCCGACGATTTGGTAGAACTCTTAAAGGACCCACTTGACGTTCAAACCTTGAATCAATGTCT
CGAACATTTCAAGGCCCTTCAATCTTCTTGTGACGATGATTTCAGTAGTGTTCAAAGTTTAGTTCAAGATTATGAGAATAAAATTAAGGCATGCCGGCAGAAAACAGAAG
AGGCGAAAGCGAACACTGTTGCAGATGATGAAATGGAGATTCTCGAAAAGGAACTCGAAGAGGAGGTTGGGAAAGGGCATTTGCTCATGGAGGAGATTAGATAA

mRNA sequence

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Protein sequence

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MGDFASKSDIEEFISFADDLVELLKDPLDVQTLNQCLEHFKALQSSCDDDFSSVQSLVQDYENKIKACRQKTEEAKANTVADDEMEILEKELEEEVGKGHLLMEEIR

HG10017309 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome