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HG10017336 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017336
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr03:13230375..13230776
RNA-Seq ExpressionHG10017336
SyntenyHG10017336
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0801636.1 hypothetical protein [Gossypium harknessii]2.2e-0536.36Show/hide
Query:  SPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLARTESLE
        S   A+ +   + +++ I  + P I++  DSL +I+  + + +NR +V  Y+ DIQ  T   R+I F+H PRS N +AH LA TE+L+
Subjt:  SPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLARTESLE

TXG67779.1 hypothetical protein EZV62_009054 [Acer yangbiense]1.2e-0638.3Show/hide
Query:  AKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLARTE-SLENCALWCDDF
        A+A  IYEG+ LA    L  + + SDSL V+++  GE+  R +V   + DIQ +    R I+  ++PRS N+VAH++AR    LEN  +  D +
Subjt:  AKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLARTE-SLENCALWCDDF

TXG71894.1 hypothetical protein EZV62_000473 [Acer yangbiense]1.0e-0538.3Show/hide
Query:  AKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLARTE-SLENCALWCDDF
        A+A  IYEGL LA    L  + + SDSL V+++  GE+  R +V   + DIQ +    R  +  ++PRS N VAH++AR    LEN  +  D +
Subjt:  AKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLARTE-SLENCALWCDDF

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.2e-0536.45Show/hide
Query:  YGGVISTPTGCLVGAMHGFKNISLSPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNI
        +G +I   +  LV A        LSPL A+   I EGL+ A      H+ V SDSL+ IQ++R E+  R +   +V +IQ +T     I+F H  R  N 
Subjt:  YGGVISTPTGCLVGAMHGFKNISLSPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNI

Query:  VAHDLAR
         AH LA+
Subjt:  VAHDLAR

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]3.8e-0536.59Show/hide
Query:  GYGGVISTPTGCLVGAMHGFKNISLSPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFN
        G G ++      +VGAM  F  +  +PL AK L I EGL LA R+ +  ++V +DSL  + ++  +   + E  ++V DI+      + I FQHV R  N
Subjt:  GYGGVISTPTGCLVGAMHGFKNISLSPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFN

Query:  IVAHDLAR-TESLENCALWCDDF
         VA+ L R T SL    LW  DF
Subjt:  IVAHDLAR-TESLENCALWCDDF

TrEMBL top hitse value%identityAlignment
A0A5C7IFK3 RNase H domain-containing protein5.7e-0738.3Show/hide
Query:  AKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLARTE-SLENCALWCDDF
        A+A  IYEG+ LA    L  + + SDSL V+++  GE+  R +V   + DIQ +    R I+  ++PRS N+VAH++AR    LEN  +  D +
Subjt:  AKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLARTE-SLENCALWCDDF

A0A5C7IST2 RNase H domain-containing protein4.8e-0638.3Show/hide
Query:  AKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLARTE-SLENCALWCDDF
        A+A  IYEGL LA    L  + + SDSL V+++  GE+  R +V   + DIQ +    R  +  ++PRS N VAH++AR    LEN  +  D +
Subjt:  AKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLARTE-SLENCALWCDDF

A0A6J1DX30 uncharacterized protein LOC1110248741.1e-0536.45Show/hide
Query:  YGGVISTPTGCLVGAMHGFKNISLSPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNI
        +G +I   +  LV A        LSPL A+   I EGL+ A      H+ V SDSL+ IQ++R E+  R +   +V +IQ +T     I+F H  R  N 
Subjt:  YGGVISTPTGCLVGAMHGFKNISLSPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNI

Query:  VAHDLAR
         AH LA+
Subjt:  VAHDLAR

A0A6J1DZK3 uncharacterized protein LOC1110249681.8e-0536.59Show/hide
Query:  GYGGVISTPTGCLVGAMHGFKNISLSPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFN
        G G ++      +VGAM  F  +  +PL AK L I EGL LA R+ +  ++V +DSL  + ++  +   + E  ++V DI+      + I FQHV R  N
Subjt:  GYGGVISTPTGCLVGAMHGFKNISLSPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFN

Query:  IVAHDLAR-TESLENCALWCDDF
         VA+ L R T SL    LW  DF
Subjt:  IVAHDLAR-TESLENCALWCDDF

A0A7J9GVN4 RNase H domain-containing protein1.1e-0536.36Show/hide
Query:  SPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLARTESLE
        S   A+ +   + +++ I  + P I++  DSL +I+  + + +NR +V  Y+ DIQ  T   R+I F+H PRS N +AH LA TE+L+
Subjt:  SPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLARTESLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein6.9e-0533.73Show/hide
Query:  SPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLAR
        SPL A+A  I   +  A+++E   +LVLSDS  ++  L   V    E+   + +I+ +    RSI+FQ +PR  N +A   A+
Subjt:  SPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGGTTATGGTGGGGTTATTAGTACTCCAACTGGGTGCTTGGTGGGTGCTATGCATGGTTTCAAGAATATATCTCTGAGTCCGTTAGGAGCTAAAGCTTTGACTAT
TTACGAGGGCCTTCGTTTGGCCATTAGAATGGAGTTACCGCATATTTTGGTATTATCTGATTCTTTAATTGTTATTCAGATTCTTAGAGGAGAGGTAAAGAACCGAGTGG
AAGTGGCAACTTATGTGGCTGACATCCAGGATATGACGGTTCACTGCAGATCTATCACATTTCAGCATGTGCCTCGTTCCTTTAATATTGTGGCGCATGATTTGGCTAGA
ACGGAAAGCTTGGAGAATTGTGCTTTGTGGTGTGATGATTTCTCTTGGGAAATTGTCAAAAAAACACAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGGTTATGGTGGGGTTATTAGTACTCCAACTGGGTGCTTGGTGGGTGCTATGCATGGTTTCAAGAATATATCTCTGAGTCCGTTAGGAGCTAAAGCTTTGACTAT
TTACGAGGGCCTTCGTTTGGCCATTAGAATGGAGTTACCGCATATTTTGGTATTATCTGATTCTTTAATTGTTATTCAGATTCTTAGAGGAGAGGTAAAGAACCGAGTGG
AAGTGGCAACTTATGTGGCTGACATCCAGGATATGACGGTTCACTGCAGATCTATCACATTTCAGCATGTGCCTCGTTCCTTTAATATTGTGGCGCATGATTTGGCTAGA
ACGGAAAGCTTGGAGAATTGTGCTTTGTGGTGTGATGATTTCTCTTGGGAAATTGTCAAAAAAACACAGTGA
Protein sequenceShow/hide protein sequence
MVGYGGVISTPTGCLVGAMHGFKNISLSPLGAKALTIYEGLRLAIRMELPHILVLSDSLIVIQILRGEVKNRVEVATYVADIQDMTVHCRSITFQHVPRSFNIVAHDLAR
TESLENCALWCDDFSWEIVKKTQ