CuGenDBv2

Gene ID	HG10017378
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
Genome location	Chr03:13903941..13904417
RNA-Seq Expression	HG10017378
Synteny	HG10017378
Gene Ontology terms	GO:0019684 - photosynthesis, light reaction (biological process) GO:0022900 - electron transport chain (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0005886 - plasma membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048038 - quinone binding (molecular function)
InterPro domains	IPR001268 - NADH:ubiquinone oxidoreductase, 30kDa subunit IPR010218 - NADH dehydrogenase, subunit C IPR020396 - NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site IPR037232 - NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88883.1 NADH-plastoquinone oxidoreductase subunit J [Lagenaria siceraria]

2.4e-91

99.37

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFA RINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

ALO21898.1 NdhJ [Cucurbita cordata]

1.4e-91

99.37

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYE+QDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

YP_009236283.1 NADH-plastoquinone oxidoreductase subunit J [Gynostemma pentaphyllum]

8.3e-92

100

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

YP_009325992.1 NADH dehydrogenase subunit J [Citrullus lanatus]

2.4e-91

99.37

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERES+DMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

YP_009751741.1 NADH dehydrogenase subunit J [Herpetospermum pedunculosum]

1.8e-91

99.37

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKP+EWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IF70 NADH-quinone oxidoreductase subunit C

4.0e-92

100

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

A0A109WWM6 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

4.0e-92

100

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

A0A2Z2CGF1 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

4.0e-92

100

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

A0A6H0EQB7 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

4.0e-92

100

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

X2F417 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

4.0e-92

100

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

SwissProt top hits

e value

%identity

Alignment

B1A938 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

3.3e-91

95.57

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQGHLS WLVKHGLVHRSLGFDYQGIETLQIKPE+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYG+DQPEEVCIKVFA R NPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADF ERESYDMLGISYDNHPRLKRILMPESW+GWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

B5LML3 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

1.8e-89

93.04

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQG+LS+WLVKHG+VHRSLGFDYQGIETLQIKPE+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEY +DQPEEVCIKVFA R NPRIPS+
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADF ERESYDMLGISYDNHPRLKRILMPESW+GWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

P31174 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

8.0e-90

92.41

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQG LSSWLVKHGL+HRSLGFDYQGIETLQIKPE+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTR+EYGIDQPEEVCIK+F AR NPRIPS+
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADF E+ESYDMLGISYDNHPRL+RILMPESW+GWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

Q0ZJ17 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

9.5e-91

94.94

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQG LS+WLVKHGLVHRSLGFDYQGIETLQIKPE+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYG+DQPEEVCIKVFA+R NPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADF ERESYDMLGISYDNHPRLKRILMPESW+GWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

Q4VZH2 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic

3.5e-93

98.73

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Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQG+LSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKSADFPERESYDMLGI YDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

Arabidopsis top hits

e value

%identity

Alignment

ATCG00420.1 NADH dehydrogenase subunit J

1.2e-85

89.24

Show/hide

Query:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV
        MQG LS WL K GLVHRSLGFDYQGIETLQIKPE+WHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYG++Q EEVCIKVF  R NPRIPSV
Subjt:  MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSV

Query:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH
        FWVWKS DF ERESYDMLGI+YD+HPRLKRILMPESW+GWPLRKDYIAPNFYEIQDA+
Subjt:  FWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

ATMG00070.1 NADH dehydrogenase subunit 9

1.1e-06

32.29

Show/hide

Query:  GIDQPE-----EVCIKVFAARIN------------PRIPSVFWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQ
        G+D P      EV   + + R N             RI  V  ++ SA   ERE +DM G+S+ NHP L+RI     + G PLRKD     + +++
Subjt:  GIDQPE-----EVCIKVFAARIN------------PRIPSVFWVWKSADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQ

Sequences

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CDS sequence

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ATGCAGGGTCATTTGTCTTCTTGGCTAGTCAAACATGGACTGGTTCATAGATCTTTGGGTTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCCCGAGGAA
TGGCATTCCATTGCAGTCATTTTATATGTATATGGTTACAATTATCTACGTTCCCAATGTGCTTATGATGTAGCACCAGGCGGACTGTTAGCTAGTGTGTATCAT
CTTACGAGAATCGAGTATGGTATAGATCAACCGGAAGAGGTATGCATAAAAGTATTTGCCGCAAGGATAAATCCTAGAATTCCGTCTGTTTTCTGGGTTTGGAAA
AGTGCGGATTTTCCAGAAAGGGAATCTTATGATATGTTGGGAATTTCTTATGATAATCATCCACGTCTAAAGCGTATCTTAATGCCTGAAAGTTGGGTAGGATGG
CCCTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTCATTAA

mRNA sequence

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Protein sequence

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MQGHLSSWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKVFAARINPRIPSVFWVWK
SADFPERESYDMLGISYDNHPRLKRILMPESWVGWPLRKDYIAPNFYEIQDAH

HG10017378 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome