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HG10017384 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017384
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPhotosystem II reaction center protein J
Genome locationChr03:13918794..13919566
RNA-Seq ExpressionHG10017384
SyntenyHG10017384
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009539 - photosystem II reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0020037 - heme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4396260.1 hypothetical protein F8388_019806 [Cannabis sativa]4.7e-2556.06Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIA----------------------------------------------ARPLDEMGREVGQMAETTGRI
        M GS GERSFADIITSIRYWVIHSITIPSLFI                                                R  DEM R+VGQMA+TTGRI
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIA----------------------------------------------ARPLDEMGREVGQMAETTGRI

Query:  PLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        PLWIIGTV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  PLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

KAF4400822.1 hypothetical protein G4B88_004365 [Cannabis sativa]8.1e-1739.38Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAA----------------RP-----------------------LDEMGR-------------------
        MSGSTGERS ADIITSIR WVIHSITIPSLFIA                 RP                       LDE  R                   
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAA----------------RP-----------------------LDEMGR-------------------

Query:  -------------------------------------------------EVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
                                                         +VGQMA+TTGRIPLWIIGTV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  -------------------------------------------------EVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

QHN53650.1 photosystem II protein J [Parietaria debilis]2.4e-1688.68Show/hide
Query:  ARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        ARP DEM R+VGQMA+TTGRIPLWIIGTVTGI VIGL+GIFFYGSYSGLGSSL
Subjt:  ARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

YP_009572284.1 photosystem II protein J [Debregeasia orientalis]2.4e-1688.68Show/hide
Query:  ARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        ARP DEM R+VGQMA+TTGRIPLWIIGTVTGI VIGL+GIFFYGSYSGLGSSL
Subjt:  ARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

YP_010131108.1 photosystem II protein J [Benincasa hispida]1.8e-16100Show/hide
Query:  MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
Subjt:  MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

TrEMBL top hitse value%identityAlignment
A0A6B9M5Y6 Photosystem II reaction center protein J8.8e-17100Show/hide
Query:  MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
Subjt:  MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

A0A6M3W028 Photosystem II reaction center protein J8.8e-17100Show/hide
Query:  MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
Subjt:  MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

A0A7J6HPK4 Cytochrome b559 subunit alpha2.3e-2556.06Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIA----------------------------------------------ARPLDEMGREVGQMAETTGRI
        M GS GERSFADIITSIRYWVIHSITIPSLFI                                                R  DEM R+VGQMA+TTGRI
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIA----------------------------------------------ARPLDEMGREVGQMAETTGRI

Query:  PLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        PLWIIGTV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  PLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

A0A7J6HZU7 Uncharacterized protein3.9e-1739.38Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAA----------------RP-----------------------LDEMGR-------------------
        MSGSTGERS ADIITSIR WVIHSITIPSLFIA                 RP                       LDE  R                   
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAA----------------RP-----------------------LDEMGR-------------------

Query:  -------------------------------------------------EVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
                                                         +VGQMA+TTGRIPLWIIGTV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  -------------------------------------------------EVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

A0A7T3USM9 Photosystem II protein J8.8e-17100Show/hide
Query:  MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
Subjt:  MGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

SwissProt top hitse value%identityAlignment
A0ZZ49 Photosystem II reaction center protein J1.3e-1495Show/hide
Query:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        MA+TTGRIPLWIIGTVTGIPVIGL+GIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

Q09MG4 Photosystem II reaction center protein J1.3e-1495Show/hide
Query:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        MA+TTGRIPLWIIGTVTGIPVIGL+GIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

Q14FE3 Photosystem II reaction center protein J1.3e-1495Show/hide
Query:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        MA+TTGRIPLWIIGTVTGIPVIGL+GIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

Q2L920 Photosystem II reaction center protein J1.3e-1495Show/hide
Query:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        MA+TTGRIPLWIIGTVTGIPVIGL+GIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

Q2QD75 Photosystem II reaction center protein J7.9e-1597.5Show/hide
Query:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        MAETTGRIPLW+IGTVTGIPVIGLVGIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

Arabidopsis top hitse value%identityAlignment
ATCG00550.1 photosystem II reaction center protein J6.9e-1487.5Show/hide
Query:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL
        MA+TTGRIPLW+IGTV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL

ATCG00580.1 photosystem II reaction center protein E2.9e-12100Show/hide
Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIA
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIA
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGCACGACCACT
TGATGAAATGGGGAGGGAAGTGGGACAAATGGCCGAGACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACTGGTATTCCTGTGATCGGTTTAGTCGGTATTT
TCTTTTATGGTTCATATTCCGGCTTAGGTTCATCTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGCACGACCACT
TGATGAAATGGGGAGGGAAGTGGGACAAATGGCCGAGACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACTGGTATTCCTGTGATCGGTTTAGTCGGTATTT
TCTTTTATGGTTCATATTCCGGCTTAGGTTCATCTCTGTAA
Protein sequenceShow/hide protein sequence
MSGSTGERSFADIITSIRYWVIHSITIPSLFIAARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLVGIFFYGSYSGLGSSL