| GenBank top hits | e value | %identity | Alignment |
|---|
| AES88253.2 DNA-directed RNA polymerase subunit alpha [Medicago truncatula] | 1.4e-183 | 77.65 | Show/hide |
Query: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
MAK IP+IGSR+NGRI SRK R+IPKGVI+VQASFNNTIVTVTDVRGRVISWSSAG+CGFKGTRRGTPFAAQTAA NAIR VVDQGMQRA V+IKGPGL
Subjt: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Query: GRDAALRAIRRS--------------------------------------GATIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNL
GRDAALRAI RS TIGIAMR+ LLGEIEGTCITRAKSEKIPHEYSTIVGIQES+HEILMNL
Subjt: GRDAALRAIRRS--------------------------------------GATIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNL
Query: KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVN
KEIVL+SNLYGTRDASIC KGPG VTAQDIILPPSVEIVDNTQHIANLTEPINLCIEL+IER RGYRI+T NN QD SY IDA+FMPVRNANHSIHSYVN
Subjt: KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVN
Query: GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLA--KLRKKKKEIALKYIFIDQSELPPRIYNCL
GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE NF +NN+ KVTLPLFTFH++L KLRK KKEIALK IFIDQ EL PRIYNCL
Subjt: GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLA--KLRKKKKEIALKYIFIDQSELPPRIYNCL
Query: KRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
K+SNIHTL +LLN S ++LMKI+HFR+EDVK+IL+IL++EK+F
Subjt: KRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
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| KAF1876904.1 hypothetical protein Lal_00033201 [Lupinus albus] | 5.6e-185 | 84.2 | Show/hide |
Query: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
MAKP P++GSR+NGRI SRK R+IPKGVIHVQASFNNTIVTVTDV GRVISWSSAGTCGFKGTRRGTPFAAQTAA NAI V DQGMQRAEVMIKGPGL
Subjt: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Query: GRDAALRAIRRSGA--TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSV
GRDAALRAIRRSG TIGIAMR+ LLGEIEGTCITRAKSEKIPHEYST+VGIQESVHEILMNLKEIVLRSNLYGTRDASI VKGPG VTAQDI+LPPSV
Subjt: GRDAALRAIRRSGA--TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSV
Query: EIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFI
EIVDNTQHIANLTEPIN I L+I RNRGYRI+T FQD SYPIDA+FM VRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEAL EASRNLIDLFI
Subjt: EIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFI
Query: PFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILE
PFLHAEEE NF +NN+ KV LP FTF + K RK KKEIALK IFIDQ EL PRIYNCLKRSNIHTLFDLLNNS ++LMK++HFR+EDVK ILDILE
Subjt: PFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILE
Query: MEKNF
+EK+F
Subjt: MEKNF
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| KAF4397623.1 hypothetical protein G4B88_027363 [Cannabis sativa] | 9.9e-190 | 76.34 | Show/hide |
Query: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
MAK IPR GSR+N SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIR VVDQGMQ+AEVMIKGPGL
Subjt: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Query: GRDAALRAIRRSGA--------------------------------------------------------------TIGIAMRKALLGEIEGTCITRAKS
GRDAALRAIRRSG TIGI MR+ALLGEIEGTCITRAKS
Subjt: GRDAALRAIRRSGA--------------------------------------------------------------TIGIAMRKALLGEIEGTCITRAKS
Query: EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
+KIPHEYS +VGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGPG VTAQDIILP SVEIVDNTQHIANLTEPINLCIEL+IERNRGYRI+TPNNFQ+
Subjt: EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
Query: ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKK
SYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL IPFLHAEE ENFHL+NN+ K TLPLF FH ++AK RK KK
Subjt: ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKK
Query: EIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
EIALKYIFIDQSELPPR+YNCLKRSNIHTL DLLNNS ++L+KIK FRIED+KHILDILE++K+F
Subjt: EIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
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| PRQ15682.1 putative DNA-directed RNA polymerase [Rosa chinensis] | 6.0e-195 | 77.63 | Show/hide |
Query: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
MAKPIP+IGSRRN RI SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGL
Subjt: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Query: GRDAALRAIRRSGA--------------------------------------------------------------TIGIAMRKALLGEIEGTCITRAKS
GRDAALRAIRRSG TIGIAMR+ALLGEIEGTCITRA+S
Subjt: GRDAALRAIRRSGA--------------------------------------------------------------TIGIAMRKALLGEIEGTCITRAKS
Query: EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGPG VTAQDIILPPSVEIVDNTQHIANLTEPINLCI+L+IERNRGYRI+TPNNFQD
Subjt: EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
Query: ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKK
SYPIDA+FMPVRNANHSIHSYVNGNEKQEILF+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE ENFH +NN+ KVTLPLFTFH+K A RK K
Subjt: ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKK
Query: EIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
EI LKYIFIDQSELPPR+YNCLKRSNIHTL DLLNNS ++L+K+KH RIEDVKHIL+ILE +K+F
Subjt: EIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
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| TXG68058.1 hypothetical protein EZV62_009333 [Acer yangbiense] | 5.4e-188 | 80.74 | Show/hide |
Query: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
MAK IPR GSRR GR+ SRKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAV DQGMQRAEVMIKGPGL
Subjt: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Query: GRDAALRAIRRSGA---------------------------------TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVL
GRDAALRAIRRSG TIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVL
Subjt: GRDAALRAIRRSGA---------------------------------TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVL
Query: RSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQ
RSNLYGTRDA ICVKGPG VTAQDI+LPPSVEIVDNTQHIANLTEP + CI L+IERNRGY I+TPNNFQD SYPIDAIFMPVRNANHSIHSY NGNEKQ
Subjt: RSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQ
Query: EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHT
EILFLEIWTNG LTPKEALHEASRNLIDLFIPFL + E EN H +NN+ KV+LP TFH+++AKL+KKKKEIA K IFIDQSEL PRIYNCLK+SNIHT
Subjt: EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHT
Query: LFDLLNNSPDELMKIKHFRIEDVKHILDILE
LFDLLNNS ++LMKI+HFRIEDVK IL ILE
Subjt: LFDLLNNSPDELMKIKHFRIEDVKHILDILE
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2P6P177 Multifunctional fusion protein | 2.9e-195 | 77.63 | Show/hide |
Query: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
MAKPIP+IGSRRN RI SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGL
Subjt: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Query: GRDAALRAIRRSGA--------------------------------------------------------------TIGIAMRKALLGEIEGTCITRAKS
GRDAALRAIRRSG TIGIAMR+ALLGEIEGTCITRA+S
Subjt: GRDAALRAIRRSGA--------------------------------------------------------------TIGIAMRKALLGEIEGTCITRAKS
Query: EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGPG VTAQDIILPPSVEIVDNTQHIANLTEPINLCI+L+IERNRGYRI+TPNNFQD
Subjt: EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
Query: ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKK
SYPIDA+FMPVRNANHSIHSYVNGNEKQEILF+EIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE ENFH +NN+ KVTLPLFTFH+K A RK K
Subjt: ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKK
Query: EIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
EI LKYIFIDQSELPPR+YNCLKRSNIHTL DLLNNS ++L+K+KH RIEDVKHIL+ILE +K+F
Subjt: EIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
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| A0A5C7IG80 Plastid-encoded RNA polymerase subunit alpha | 2.6e-188 | 80.74 | Show/hide |
Query: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
MAK IPR GSRR GR+ SRKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAV DQGMQRAEVMIKGPGL
Subjt: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Query: GRDAALRAIRRSGA---------------------------------TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVL
GRDAALRAIRRSG TIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVL
Subjt: GRDAALRAIRRSGA---------------------------------TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVL
Query: RSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQ
RSNLYGTRDA ICVKGPG VTAQDI+LPPSVEIVDNTQHIANLTEP + CI L+IERNRGY I+TPNNFQD SYPIDAIFMPVRNANHSIHSY NGNEKQ
Subjt: RSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQ
Query: EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHT
EILFLEIWTNG LTPKEALHEASRNLIDLFIPFL + E EN H +NN+ KV+LP TFH+++AKL+KKKKEIA K IFIDQSEL PRIYNCLK+SNIHT
Subjt: EILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHT
Query: LFDLLNNSPDELMKIKHFRIEDVKHILDILE
LFDLLNNS ++LMKI+HFRIEDVK IL ILE
Subjt: LFDLLNNSPDELMKIKHFRIEDVKHILDILE
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| A0A6A5MQ34 Plastid-encoded RNA polymerase subunit alpha | 2.7e-185 | 84.2 | Show/hide |
Query: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
MAKP P++GSR+NGRI SRK R+IPKGVIHVQASFNNTIVTVTDV GRVISWSSAGTCGFKGTRRGTPFAAQTAA NAI V DQGMQRAEVMIKGPGL
Subjt: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Query: GRDAALRAIRRSGA--TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSV
GRDAALRAIRRSG TIGIAMR+ LLGEIEGTCITRAKSEKIPHEYST+VGIQESVHEILMNLKEIVLRSNLYGTRDASI VKGPG VTAQDI+LPPSV
Subjt: GRDAALRAIRRSGA--TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSV
Query: EIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFI
EIVDNTQHIANLTEPIN I L+I RNRGYRI+T FQD SYPIDA+FM VRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEAL EASRNLIDLFI
Subjt: EIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFI
Query: PFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILE
PFLHAEEE NF +NN+ KV LP FTF + K RK KKEIALK IFIDQ EL PRIYNCLKRSNIHTLFDLLNNS ++LMK++HFR+EDVK ILDILE
Subjt: PFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILE
Query: MEKNF
+EK+F
Subjt: MEKNF
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| A0A7J6HQR3 Plastid-encoded RNA polymerase subunit alpha | 4.8e-190 | 76.34 | Show/hide |
Query: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
MAK IPR GSR+N SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIR VVDQGMQ+AEVMIKGPGL
Subjt: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Query: GRDAALRAIRRSGA--------------------------------------------------------------TIGIAMRKALLGEIEGTCITRAKS
GRDAALRAIRRSG TIGI MR+ALLGEIEGTCITRAKS
Subjt: GRDAALRAIRRSGA--------------------------------------------------------------TIGIAMRKALLGEIEGTCITRAKS
Query: EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
+KIPHEYS +VGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGPG VTAQDIILP SVEIVDNTQHIANLTEPINLCIEL+IERNRGYRI+TPNNFQ+
Subjt: EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQD
Query: ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKK
SYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDL IPFLHAEE ENFHL+NN+ K TLPLF FH ++AK RK KK
Subjt: ASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKK
Query: EIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
EIALKYIFIDQSELPPR+YNCLKRSNIHTL DLLNNS ++L+KIK FRIED+KHILDILE++K+F
Subjt: EIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
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| G7JH57 Plastid-encoded RNA polymerase subunit alpha | 6.7e-184 | 77.65 | Show/hide |
Query: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
MAK IP+IGSR+NGRI SRK R+IPKGVI+VQASFNNTIVTVTDVRGRVISWSSAG+CGFKGTRRGTPFAAQTAA NAIR VVDQGMQRA V+IKGPGL
Subjt: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Query: GRDAALRAIRRS--------------------------------------GATIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNL
GRDAALRAI RS TIGIAMR+ LLGEIEGTCITRAKSEKIPHEYSTIVGIQES+HEILMNL
Subjt: GRDAALRAIRRS--------------------------------------GATIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNL
Query: KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVN
KEIVL+SNLYGTRDASIC KGPG VTAQDIILPPSVEIVDNTQHIANLTEPINLCIEL+IER RGYRI+T NN QD SY IDA+FMPVRNANHSIHSYVN
Subjt: KEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVN
Query: GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLA--KLRKKKKEIALKYIFIDQSELPPRIYNCL
GNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEEE NF +NN+ KVTLPLFTFH++L KLRK KKEIALK IFIDQ EL PRIYNCL
Subjt: GNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKNNKQKVTLPLFTFHEKLA--KLRKKKKEIALKYIFIDQSELPPRIYNCL
Query: KRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
K+SNIHTL +LLN S ++LMKI+HFR+EDVK+IL+IL++EK+F
Subjt: KRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| Q09WY5 DNA-directed RNA polymerase subunit alpha | 2.0e-140 | 84.28 | Show/hide |
Query: GRDAALRAIRRSGATIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEI
GR +R TIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPG VTAQDIILPPSVEI
Subjt: GRDAALRAIRRSGATIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEI
Query: VDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPF
VDNTQHIANLTEPI LCIEL+IERNRGYRI+TPNNFQ+ SYPIDA+FMPVRNANHSIHSYVNGNE QEILFLEIWTNGSLTPKEALHEASRNLIDLFIPF
Subjt: VDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPF
Query: LHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEM
HAEE HL+NN+ K TLPLF FH +LAK RK KKEIALKYI+IDQSELPPR+YNCLKRSNI+T +LLNNS +ELMKI+ FRIEDVKHILD+LE+
Subjt: LHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEM
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| Q2PMQ3 DNA-directed RNA polymerase subunit alpha | 1.1e-140 | 85.91 | Show/hide |
Query: TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPI
TIGIAMR+ LLGEIEGTCITR KSEKIPHEYSTI+GI+ESVHEILMNLKEIVLRSNLYGTRDASIC KGPG VTAQDIILPPSVEIVDNTQHIAN+TEP+
Subjt: TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPI
Query: NLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKN
NLCIELKIERNRGYRI+T NFQD SYPIDA FMPVRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEAL+EASRNLIDLFIPFLHAEE +NF+L+N
Subjt: NLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKN
Query: NKQKVTLPLFTFHEKLA--KLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
N+ KVTLPLFTFH+ LA KLRKKKKEIALK IFIDQ ELPPRIYNCLKRSNIHTL +LLNNS ++L+KI+HFR+EDVK+ILD LE+EK+F
Subjt: NKQKVTLPLFTFHEKLA--KLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
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| Q49KW6 DNA-directed RNA polymerase subunit alpha | 1.1e-140 | 86.85 | Show/hide |
Query: TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPI
TIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+ASICVKGPGCVTAQDIILP SVEIVDNTQ+IANLTEPI
Subjt: TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPI
Query: NLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKN
NLCI L+IERNRGY I+TP NFQD SYPIDA+FMPVRNANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEE EN HL+N
Subjt: NLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKN
Query: NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
N+ KVTLP FTFH++LAKLRK KKEIALK IFIDQ ELPPR YNCLKR NIHTLFDLLN S ++LMK+++FRIEDVK ILD LE+EK F
Subjt: NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
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| Q4VZK3 DNA-directed RNA polymerase subunit alpha | 2.4e-162 | 94.39 | Show/hide |
Query: GRDAALRAIRRSGATIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEI
GR ++ G TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEI
Subjt: GRDAALRAIRRSGATIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEI
Query: VDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPF
VDNTQHIANL EPINLCIELKIERNRGY IQTPNNFQDASYP+DAIFMPVRN NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPF
Subjt: VDNTQHIANLTEPINLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPF
Query: LHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEME
LHAEEEKENFHLKNNK+KVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKR NIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEME
Subjt: LHAEEEKENFHLKNNKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEME
Query: KNF
KNF
Subjt: KNF
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| Q9MTJ3 DNA-directed RNA polymerase subunit alpha | 2.9e-136 | 84.78 | Show/hide |
Query: TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPI
TIGIAMR+ALLGEIEGTCITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT +ASICVKGPGCVTAQDI+LPPSVEI+DNTQHIA+L EPI
Subjt: TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPI
Query: NLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKN
+LCI L+IERNRGY I++PNNFQD SYPIDA+FMPVRNANHSIHSY N NEKQEILFLEIWTNGSLTPKEALHEASRNLIDLF+PFLHAEE EN HL
Subjt: NLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKN
Query: NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
NK VT PLFTFH+KLAKLRK K EIALK IFIDQ ELPPRIYN LK S IHTL DLLN S ++LMK+KHFRIEDVK ILDILE+EK F
Subjt: NKQKVTLPLFTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILEMEKNF
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT2G36160.1 Ribosomal protein S11 family protein | 2.9e-06 | 36.36 | Show/hide |
Query: GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGATIG
GV+H+ ASFN+T + VTD+ GR G K R +P+AA AA + + + G+ V + K PG G +ALRA+ RSG IG
Subjt: GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGATIG
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| AT3G11510.1 Ribosomal protein S11 family protein | 2.9e-06 | 36.36 | Show/hide |
Query: GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGATIG
GV+H+ ASFN+T + VTD+ GR G K R +P+AA AA + + + G+ V + K PG G +ALRA+ RSG IG
Subjt: GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGATIG
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| AT3G52580.1 Ribosomal protein S11 family protein | 2.2e-06 | 37.37 | Show/hide |
Query: GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGATIG
GV+HV ASFN+T + VTD+ GR G K R +P+AA AA + + + G+ V + K PG G +ALRA+ RSG IG
Subjt: GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRSGATIG
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| ATCG00740.1 RNA polymerase subunit alpha | 4.2e-130 | 79.37 | Show/hide |
Query: TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPI
TIGIAMR+ALLGEIEGTCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR+A ICV+GPG +TA+DIILPP+VEI+DNTQHIA LTEPI
Subjt: TIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPI
Query: NLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKN
+LCIELKIERNRGY ++ NNF+D SYPIDA+FMPV NANHSIHSY NGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLH EE E F+L+N
Subjt: NLCIELKIERNRGYRIQTPNNFQDASYPIDAIFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLKN
Query: NKQKVTLPLFTFHEKLAKLRKKK--KEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILE
N+ +VTLP F FH +L LRKKK KE+A +YIFIDQ ELPPRIYNCLK+SNIHTL DLLNNS ++L+KI+HF +EDVK ILDILE
Subjt: NKQKVTLPLFTFHEKLAKLRKKK--KEIALKYIFIDQSELPPRIYNCLKRSNIHTLFDLLNNSPDELMKIKHFRIEDVKHILDILE
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| ATCG00750.1 ribosomal protein S11 | 6.6e-51 | 92.04 | Show/hide |
Query: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
MAKPI RIGSR+N R SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV IKGPGL
Subjt: MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Query: GRDAALRAIRRSG
GRDAALRAIRRSG
Subjt: GRDAALRAIRRSG
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