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HG10017401 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017401
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibulose bisphosphate carboxylase large chain
Genome locationChr03:13994540..13994848
RNA-Seq ExpressionHG10017401
SyntenyHG10017401
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4109387.1 hypothetical protein ERO13_1Z050202v2, partial [Gossypium hirsutum]9.9e-3085.19Show/hide
Query:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL
        S HIDIPSTQHRSSKGSRR TKAR P SFRKWIPIRRVHNRMDKLTLTRQF IQFGIFLG I KELECNNIDSYR ++ S+
Subjt:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL

PPR83387.1 hypothetical protein GOBAR_AA37329 [Gossypium barbadense]8.1e-3287.65Show/hide
Query:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL
        S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG I KELECNNIDSYR ++ S+
Subjt:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL

TYG79516.1 hypothetical protein ES288_D02G144500v1, partial [Gossypium darwinii]2.2e-2985.19Show/hide
Query:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL
        S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQF IFLG I KELECNNIDSYR ++ S+
Subjt:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL

TYI03364.1 hypothetical protein ES332_A11G333500v1 [Gossypium tomentosum]3.4e-3086.42Show/hide
Query:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL
        S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGIFLG I KELECNNIDSYR ++ S+
Subjt:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL

TYJ12281.1 hypothetical protein E1A91_A11G338200v1, partial [Gossypium mustelinum]1.3e-2985.19Show/hide
Query:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL
        S +IDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGIFLG I KELECNNIDSYR ++ S+
Subjt:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL

TrEMBL top hitse value%identityAlignment
A0A2P5VX61 Uncharacterized protein3.9e-3287.65Show/hide
Query:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL
        S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLG I KELECNNIDSYR ++ S+
Subjt:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL

A0A5D2DGW6 Uncharacterized protein (Fragment)1.1e-2985.19Show/hide
Query:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL
        S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQF IFLG I KELECNNIDSYR ++ S+
Subjt:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL

A0A5D2NJX8 Uncharacterized protein1.6e-3086.42Show/hide
Query:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL
        S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGIFLG I KELECNNIDSYR ++ S+
Subjt:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL

A0A5D2P344 Uncharacterized protein (Fragment)3.1e-2983.95Show/hide
Query:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL
        S HIDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGIFL  I KE ECNNIDSYR ++ S+
Subjt:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL

A0A5D2XHD7 Uncharacterized protein (Fragment)6.3e-3085.19Show/hide
Query:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL
        S +IDIPSTQHRSSKGSRR TKARKP SFRKWIPIRRVHNRMDKLTLTRQF IQFGIFLG I KELECNNIDSYR ++ S+
Subjt:  SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCATATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCACGAAAGCCAGAATCTTTCAGAAAATGGATTCCTATTCGAAG
AGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTTGGATCCAATTCGGAATTTTCCTTGGGAGTATCGGGAAGGAATTGGAATGTAATAATATCGATTCAT
ACAGATACAGAAAAGGTTCTCTATTGATTCAAACACTGTACCCGCGGGATAGGGATAGAGAAAAGGAAAAAAACGAAGATTTCACATAG
mRNA sequenceShow/hide mRNA sequence
TCATATCATATAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGAGACCCACCAAAGCACGAAAGCCAGAATCTTTCAGAAAATGGATTCCTATTCGAAG
AGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTTGGATCCAATTCGGAATTTTCCTTGGGAGTATCGGGAAGGAATTGGAATGTAATAATATCGATTCAT
ACAGATACAGAAAAGGTTCTCTATTGATTCAAACACTGTACCCGCGGGATAGGGATAGAGAAAAGGAAAAAAACGAAGATTTCACATAG
Protein sequenceShow/hide protein sequence
SYHIDIPSTQHRSSKGSRRPTKARKPESFRKWIPIRRVHNRMDKLTLTRQFWIQFGIFLGSIGKELECNNIDSYRYRKGSLLIQTLYPRDRDREKEKNEDFT