; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10017402 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017402
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationChr03:13995025..13995405
RNA-Seq ExpressionHG10017402
SyntenyHG10017402
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005679 - Ribosomal protein S12, bacterial-type
IPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF1876942.1 hypothetical protein Lal_00033867 [Lupinus albus]2.3e-5290.4Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKIS +VL SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGT
        H VVLVRGG VKDLPGVRYHIVRGT
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGT

RWR98012.1 LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae]7.1e-5492Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGT
        HSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGT

XP_022932068.1 uncharacterized protein LOC111438394 [Cucurbita moschata]1.2e-6199.21Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
        MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGT
        EHSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGT

XP_038896566.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]1.9e-5996.03Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
        MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPK  NSALRKVARVRLTSGFEI AYIPGIGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGT
        EHS VLVRGGRVKDLPGVRYHIVRGT
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGT

XP_038902483.1 30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]2.8e-5895.24Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
        MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLS+NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGT
        E+ VVLVRG RVKDLP VRYHIVRGT
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGT

TrEMBL top hitse value%identityAlignment
A0A3S3NSS0 30S ribosomal protein S12, chloroplastic3.5e-5492Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKIS T   S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGT
        HSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGT

A0A443Q5I9 30S ribosomal protein S12, chloroplastic2.7e-5188Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGT
        HSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGT

A0A6A5N1Q8 Uncharacterized protein1.1e-5290.4Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKIS +VL SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGT
        H VVLVRGG VKDLPGVRYHIVRGT
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGT

A0A6J1F0L1 uncharacterized protein LOC1114383945.9e-6299.21Show/hide
Query:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
        MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ
Subjt:  MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQ

Query:  EHSVVLVRGGRVKDLPGVRYHIVRGT
        EHSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  EHSVVLVRGGRVKDLPGVRYHIVRGT

U5CU38 Uncharacterized protein2.0e-4985.6Show/hide
Query:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE
        +EN TELV VT RDG+EEGRRFS+EEKDP+TSKELNEEPYE         S SKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QE
Subjt:  NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQE

Query:  HSVVLVRGGRVKDLPGVRYHIVRGT
        HSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  HSVVLVRGGRVKDLPGVRYHIVRGT

SwissProt top hitse value%identityAlignment
A4GYN8 30S ribosomal protein S12-B, chloroplastic1.2e-3594.94Show/hide
Query:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
        T + SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  TVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT

A4QJD9 30S ribosomal protein S12, chloroplastic1.7e-29100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT

A4QJV5 30S ribosomal protein S12-A, chloroplastic1.7e-29100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT

A4QJX7 30S ribosomal protein S12-B, chloroplastic2.0e-3090.28Show/hide
Query:  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
        +G  +  +STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  KGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT

Q3V510 30S ribosomal protein S12, chloroplastic1.7e-29100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein3.6e-1953.41Show/hide
Query:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRG
        EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG
Subjt:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRG

ATCG00065.1 ribosomal protein S12A1.2e-30100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT

ATCG00905.1 ribosomal protein S12C1.2e-30100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT

ATCG01230.1 ribosomal protein S12B1.2e-30100Show/hide
Query:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
        TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT
Subjt:  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGT

ATMG00980.1 Ribosomal protein S12/S23 family protein3.6e-1953.41Show/hide
Query:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRG
        EE      +R +     K  +    ST TPKKPNSA RK+A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG
Subjt:  EEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAA
CGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCT
TACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGA
AGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAA
CGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCT
TACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGA
AGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCTAG
Protein sequenceShow/hide protein sequence
MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGG
RVKDLPGVRYHIVRGT