CuGenDBv2

Gene ID	HG10017413
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Cytochrome f
Genome location	Chr03:14073829..14074317
RNA-Seq Expression	HG10017413
Synteny	HG10017413
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0022900 - electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0031361 - integral component of thylakoid membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR002325 - Cytochrome f IPR024094 - Cytochrome f large domain IPR036826 - Cytochrome f large domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM88874.1 cytochrome f, partial [Lagenaria siceraria]

1.2e-85

98.75

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

YP_009326002.1 cytochrome f [Citrullus lanatus]

1.2e-85

98.75

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

YP_009456159.1 cytochrome f [Lagenaria siceraria]

1.2e-85

98.75

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

YP_009560848.1 PetA [Trichosanthes kirilowii]

2.0e-85

98.12

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Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYI+TWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

YP_010131107.1 cytochrome f [Benincasa hispida]

1.2e-85

98.75

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Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE85 Cytochrome f

5.7e-86

98.75

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

A0A1P8LEF8 Cytochrome f

5.7e-86

98.75

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

A0A7T3USJ1 Cytochrome f

5.7e-86

98.75

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

X2EYC3 Cytochrome f

5.7e-86

98.75

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

X2EYI0 Cytochrome f (Fragment)

5.7e-86

98.75

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

SwissProt top hits

e value

%identity

Alignment

A0A348 Cytochrome f

2.0e-83

93.75

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYI+T   VSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYD QLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEK+GNLSFQSYRP KKNILVIGP+PGQKYSEITFPILSPDPATKKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

B1A948 Cytochrome f

2.3e-84

93.12

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYI+TWA +SNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPE+KEK+GNLSFQ+YRPT+K ILVIGPVPGQKYSEITFPILSPDPAT KDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

B1NWG3 Cytochrome f

1.2e-85

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Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYI+TWA +SNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKG LNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPE+KEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPA KKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

Q1KXU6 Cytochrome f

2.6e-83

93.12

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYI+T   +SNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYD QLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEKMGNLSFQSYRP +KNILVIGPVPGQKYSEITFPILSPDPATKKD+HFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

Q2QD76 Cytochrome f

2.7e-88

98.12

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        MIYI+TWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

Arabidopsis top hits

e value

%identity

Alignment

ATCG00540.1 photosynthetic electron transfer A

1.7e-82

89.38

Show/hide

Query:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD
        +IYI+TWA +S+AYPIFAQQ YENPREATGRIVCANCHLANKPVDIEVPQ VLPDTVFEAVV+IPYDMQLKQVLANGKKG LNVGAVLILPEGFELAPPD
Subjt:  MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPD

Query:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP
        RISPE+KEK+GNLSFQ+YRP KKNILVIGPVPGQKYSEITFPIL+PDPAT KDVHFL  P
Subjt:  RISPEIKEKMGNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATATATATACTAACTTGGGCACCCGTTTCAAATGCATATCCCATTTTTGCACAACAGGGTTATGAAAATCCACGAGAAGCAACCGGCCGTATTGTCTGCGCCAACTG
CCATTTAGCTAATAAGCCCGTGGATATCGAGGTTCCACAAGCGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAACTGAAACAAGTTC
TTGCGAATGGTAAAAAGGGCGGTTTGAATGTGGGGGCTGTTCTTATTTTACCCGAAGGGTTTGAATTAGCCCCCCCCGATCGTATTTCTCCCGAGATTAAAGAAAAGATG
GGCAATCTGTCTTTTCAGAGCTATCGTCCCACTAAAAAAAATATTCTTGTGATAGGGCCTGTTCCTGGTCAGAAATATAGTGAAATCACCTTTCCTATTCTTTCCCCGGA
CCCTGCGACTAAGAAAGATGTTCACTTCTTAAATATCCCATATACGTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MIYILTWAPVSNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPEIKEKM
GNLSFQSYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLNIPYT

HG10017413 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome