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HG10017415 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017415
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase subunit alpha
Genome locationChr03:14090425..14091904
RNA-Seq ExpressionHG10017415
SyntenyHG10017415
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0006413 - translational initiation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR001971 - Ribosomal protein S11
IPR011773 - DNA-directed RNA polymerase, alpha subunit
IPR036603 - RNA polymerase, RBP11-like subunit
IPR036643 - DNA-directed RNA polymerase, insert domain superfamily
IPR036967 - Ribosomal protein S11 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD0481659.1 hypothetical protein E3N88_44197 [Mikania micrantha]2.2e-7085.29Show/hide
Query:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS---------------DSKRLYYGRFILSPLMK
        DVRGRV+SWSSAGTCGF+GTRRGTPFAAQTAA NAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS               DSKRL YGRFILSPLMK
Subjt:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS---------------DSKRLYYGRFILSPLMK

Query:  GQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        GQADTIGIAMR+ALLGEIEGTCITRAKSEKI HEYSTI+GIQESVHEILMNLKEIVLRSNLYGT +AS+C
Subjt:  GQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

KAF8376862.1 hypothetical protein HHK36_031458 [Tetracentron sinense]1.5e-7185.47Show/hide
Query:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS-----------------DSKRLYYGRFILSPL
        DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGN IR VVDQGMQRAEVMIKGPGLGRDAALRAIRRS                 DSKRLYYGRFILSPL
Subjt:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS-----------------DSKRLYYGRFILSPL

Query:  MKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        MKGQADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGI+ESV EIL+NLKEIVLRSNLYGT DAS+C
Subjt:  MKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

KAF9825354.1 hypothetical protein H0E87_005076 [Populus deltoides]7.9e-7695.48Show/hide
Query:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDSKRLYYGRFILSPLMKGQADTIGIAMRKALL
        DVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSDSKRLYYGRFILSPLMKGQADTIGIAMR+ALL
Subjt:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDSKRLYYGRFILSPLMKGQADTIGIAMRKALL

Query:  GEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        GE+EGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+A +C
Subjt:  GEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

TXG68058.1 hypothetical protein EZV62_009333 [Acer yangbiense]9.6e-7488.76Show/hide
Query:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS--------------DSKRLYYGRFILSPLMKG
        DVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRS              DSKRLYYGRFILSPLMKG
Subjt:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS--------------DSKRLYYGRFILSPLMKG

Query:  QADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        QADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDA +C
Subjt:  QADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

XP_027332403.1 uncharacterized protein LOC113847446 [Abrus precatorius]9.9e-7178.72Show/hide
Query:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS--------------------------------
        DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRS                                
Subjt:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS--------------------------------

Query:  -DSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
         DSKRLYYGRFILSPLMKGQADTIGIA+R+ LLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGT+DAS+C
Subjt:  -DSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

TrEMBL top hitse value%identityAlignment
A0A2P6P177 Multifunctional fusion protein1.8e-7075.25Show/hide
Query:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS--------------------------------
        DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRS                                
Subjt:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS--------------------------------

Query:  -----------DSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
                   DSKRLYYGRFIL+PLMKGQADTIGIAMR+ALLGEIEGTCITRA+SEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTR+AS+C
Subjt:  -----------DSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

A0A5C7IG80 Plastid-encoded RNA polymerase subunit alpha4.6e-7488.76Show/hide
Query:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS--------------DSKRLYYGRFILSPLMKG
        DVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAV DQGMQRAEVMIKGPGLGRDAALRAIRRS              DSKRLYYGRFILSPLMKG
Subjt:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS--------------DSKRLYYGRFILSPLMKG

Query:  QADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        QADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDA +C
Subjt:  QADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

A0A5N6LCR1 RPOLD domain-containing protein1.1e-7085.29Show/hide
Query:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS---------------DSKRLYYGRFILSPLMK
        DVRGRV+SWSSAGTCGF+GTRRGTPFAAQTAA NAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS               DSKRL YGRFILSPLMK
Subjt:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS---------------DSKRLYYGRFILSPLMK

Query:  GQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        GQADTIGIAMR+ALLGEIEGTCITRAKSEKI HEYSTI+GIQESVHEILMNLKEIVLRSNLYGT +AS+C
Subjt:  GQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

A0A5N6N9A8 S1-like domain-containing protein3.1e-7083.72Show/hide
Query:  TNDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS---------------DSKRLYYGRFILSPL
        T DVRGRV+SWSSAGTCGF+GTRRGTPFAAQTAA NAIRAVVDQGMQRAEVMIKGPGLGRDA LRAIRRS               DSKRL YGRFILSPL
Subjt:  TNDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS---------------DSKRLYYGRFILSPL

Query:  MKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        MKGQADTIGIAMR+ALLGEIEGTCITRAK EKI HEYSTI+GIQESVHEILMNLKEIVLRSNLYGT +AS+C
Subjt:  MKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

A0A7J6HLW7 Uncharacterized protein4.1e-7082.18Show/hide
Query:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS-------------------DSKRLYYGRFILS
        DVRGRVISWSSAGTCGFKGTRRGTPFAAQT AGNAIR VVDQGMQ+AEVMIKGPGLGRDAALRAIRRS                   DSK LYYGRFIL+
Subjt:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS-------------------DSKRLYYGRFILS

Query:  PLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        PLM+GQADTIGI MR+ALLGEIEGTCITRAKS KIPHEYS IVGIQESVHEILMNLKEIVLRSNLYGTR+AS+C
Subjt:  PLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

SwissProt top hitse value%identityAlignment
A1XGS0 DNA-directed RNA polymerase subunit alpha2.6e-4295.51Show/hide
Query:  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        R+DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGI+ESVHEILMNLKEIVLRSNLYGTRDAS+C
Subjt:  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

Q09WY5 DNA-directed RNA polymerase subunit alpha1.0e-4193.26Show/hide
Query:  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        R+DSKRLYYGRF+L+PLM+GQADTIGIAMR+ALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAS+C
Subjt:  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

Q3V502 DNA-directed RNA polymerase subunit alpha2.2e-4192.13Show/hide
Query:  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        R+DSKRLYYGRFILSPL+KGQADTIGIAMR+ALLGEIEGTCITRAKSEK+PHEYSTI GI+ESVHEILMNLKEIVLRSNLYGTRDAS+C
Subjt:  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

Q4VZK3 DNA-directed RNA polymerase subunit alpha1.6e-4296.63Show/hide
Query:  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        R+DSKRLYYGRFILSPLMKGQ DTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDAS+C
Subjt:  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

Q7YJU6 DNA-directed RNA polymerase subunit alpha1.7e-4192.13Show/hide
Query:  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        R+DS RLYYGRF+LSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEK+PHEYSTIVGI+ESVHEILMNLKEIVL+SNLYGTRDAS+C
Subjt:  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

Arabidopsis top hitse value%identityAlignment
ATCG00740.1 RNA polymerase subunit alpha2.2e-3987.64Show/hide
Query:  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC
        + DSKRLYYGRFILSPLMKGQADTIGIAMR+ALLGEIEGTCITRAKSE IPH+YS I GIQESVHEILMNL EIVLRSNLYGTR+A +C
Subjt:  RSDSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLC

ATCG00750.1 ribosomal protein S111.1e-3097.06Show/hide
Query:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS
        DVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV IKGPGLGRDAALRAIRRS
Subjt:  DVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAACAAAAAGGATTAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATT
CAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCC
CTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGCGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCAAGCGGATACT
ATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCA
AGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTTTGTGTCAAGGGTCCTGGATGCGTAACTGCT
CAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGAACAAAAAGGATTAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACGTGTGGATT
CAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAAAGGGCC
CTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGCGACAGTAAGCGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCAAGCGGATACT
ATAGGCATTGCGATGCGAAAAGCTTTACTTGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCA
AGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGTGATGCGTCTTTGTGTCAAGGGTCCTGGATGCGTAACTGCT
CAAGACATCATCTTACCACCTTCGGTAGAAATCGTTGA
Protein sequenceShow/hide protein sequence
MKEQKGLRISEGLITESLTNDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDSKRLYYGRFILSPLMKGQADT
IGIAMRKALLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASLCQGSWMRNCSRHHLTTFGRNR