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HG10017434 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017434
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr03:14273860..14274390
RNA-Seq ExpressionHG10017434
SyntenyHG10017434
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4346040.1 hypothetical protein G4B88_010052 [Cannabis sativa]1.2e-1435Show/hide
Query:  RQEERHSADVGRDRWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKA
        R + + + D+    W PP VGSLKLN D A SP  N+ G G ++ D SG V+ A++     Q++    E   LL  LK  R  GL   H+E D + LI  
Subjt:  RQEERHSADVGRDRWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKA

Query:  ISENSMKCSPHGAILNEIRCLLSLDMIISLKYISRSINHVAHNLA--------AWAWSRQ
        +   +   S +G I+N IR + S    + L +  R  N  AHNLA         W+W+ Q
Subjt:  ISENSMKCSPHGAILNEIRCLLSLDMIISLKYISRSINHVAHNLA--------AWAWSRQ

XP_023904539.1 uncharacterized protein LOC112016250 [Quercus suber]1.2e-1436.3Show/hide
Query:  RWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISENSMKCSPHGA
        +W PPA    K+N D A     N+ GLG +I DS G V+V+ +  +P    +  VEAL     L++    GL    +E D+  L+KA+  NS   +  G 
Subjt:  RWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISENSMKCSPHGA

Query:  ILNEIRCLLSLDMIISLKYISRSINHVAHNLAAWAWSRQSCEVWVE
        I+N+I  L S   +IS  ++ R  N VAH++A  A S  S +VW+E
Subjt:  ILNEIRCLLSLDMIISLKYISRSINHVAHNLAAWAWSRQSCEVWVE

XP_024164232.1 uncharacterized protein LOC112171254 [Rosa chinensis]1.6e-1437.4Show/hide
Query:  WSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISENSMKCSPHGAI
        W PP+VG LK+N D AC   +N  GLG +  D+ G++  A +      L   +VEAL LLHGL+   + G  ++ VE DA +++ A+ ++S   S  G I
Subjt:  WSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISENSMKCSPHGAI

Query:  LNEIRCLLSLDMIISLKYISRSINHVAHNLA
        + E++ L+ L  + S  ++ R  N+VAH LA
Subjt:  LNEIRCLLSLDMIISLKYISRSINHVAHNLA

XP_042965942.1 uncharacterized protein LOC122299620 [Carya illinoinensis]2.0e-1436.05Show/hide
Query:  WSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAI-SENSMKCSPHGA
        WSPP  G LKLN+D A      K G+G ++ D  G V++A+S    Y  E   +E + +L GL+L    G+  + VE+D + L++ +  E     S  G 
Subjt:  WSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAI-SENSMKCSPHGA

Query:  ILNEIRCLLSLDMIISLKYISRSINHVAHNLAAWAWSRQSCEVWVES
        + +E++ L+SL  I   K++SR  N  AH LA  AW+     VW ES
Subjt:  ILNEIRCLLSLDMIISLKYISRSINHVAHNLAAWAWSRQSCEVWVES

XP_042979948.1 uncharacterized protein LOC122310131 [Carya illinoinensis]1.2e-1430.57Show/hide
Query:  RWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISENSMKCSPHGA
        RW PP  G+ KLN+D A        G+G I+ DS G V++A+S       ++ ++E L +L GL+L  + G+ ++ +E+DA  L+K + +     +  G 
Subjt:  RWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISENSMKCSPHGA

Query:  ILNEIRCLLSLDMIISLKYISRSINHVAHNLAAWAWSRQSCEVWVESPHLIVVMCIY
        ++ + + L+S   +  ++Y  RS N VAH LA  AW      +W  S   ++V  ++
Subjt:  ILNEIRCLLSLDMIISLKYISRSINHVAHNLAAWAWSRQSCEVWVESPHLIVVMCIY

TrEMBL top hitse value%identityAlignment
A0A7J6DJR8 Uncharacterized protein5.8e-1535Show/hide
Query:  RQEERHSADVGRDRWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKA
        R + + + D+    W PP VGSLKLN D A SP  N+ G G ++ D SG V+ A++     Q++    E   LL  LK  R  GL   H+E D + LI  
Subjt:  RQEERHSADVGRDRWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKA

Query:  ISENSMKCSPHGAILNEIRCLLSLDMIISLKYISRSINHVAHNLA--------AWAWSRQ
        +   +   S +G I+N IR + S    + L +  R  N  AHNLA         W+W+ Q
Subjt:  ISENSMKCSPHGAILNEIRCLLSLDMIISLKYISRSINHVAHNLA--------AWAWSRQ

A0A803NTC1 Uncharacterized protein1.3e-1434.81Show/hide
Query:  EERHSADVGRDRWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAIS
        + + + D+    W PP VG+LKLN D A S   NK G G I+ D +G V+ A++     Q++  A E   L  GLK  R  GL   H+E D + L+  + 
Subjt:  EERHSADVGRDRWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAIS

Query:  ENSMKCSPHGAILNEIRCLLSLDMIISLKYISRSINHVAHNLA--------AWAWSRQ
              S +G I+N IR +LS    ++L +  R  N  AHNLA         W W+ Q
Subjt:  ENSMKCSPHGAILNEIRCLLSLDMIISLKYISRSINHVAHNLA--------AWAWSRQ

A0A803PZC5 Uncharacterized protein5.8e-1532.88Show/hide
Query:  WSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISENSMKCSPHGAI
        W PP +G LK+N+D A   + N++GLG +I +S+G V+ A S  +     S  +EA  + H L     W L   HVE DA  +  A+   +   +    +
Subjt:  WSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISENSMKCSPHGAI

Query:  LNEIRCLLSLDMIISLKYISRSINHVAHNLAAWAWSRQSCEVWVES
        + +I CLLS    +S+ ++ R+ N  AH LA +A        W+ES
Subjt:  LNEIRCLLSLDMIISLKYISRSINHVAHNLAAWAWSRQSCEVWVES

A0A803Q7X1 Uncharacterized protein9.8e-1535.9Show/hide
Query:  RHSADVGRDRWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISEN
        +H+ D     W PP++GSLKLN+  A S   +K G G ++ DS+G V+ A +     Q++  A E  TLL GL+     G+   HVE D + L+  +  N
Subjt:  RHSADVGRDRWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISEN

Query:  SMKCSPHGAILNEIRCLLSLDMIISLKYISRSINHVAHNLA--------AWAWSRQ
            S +GAI++ IR +LS    +SL ++ R  N  AHNLA         W W+ Q
Subjt:  SMKCSPHGAILNEIRCLLSLDMIISLKYISRSINHVAHNLA--------AWAWSRQ

A0A803QGC3 Uncharacterized protein8.0e-1733.79Show/hide
Query:  WSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISENSMKCSPHGAI
        W PP  G   +N D +    S   G+  +I DS G +VVA++ FLP  +     +A T+LHG+ L R W + NV V +D+Q +IKA+S  +   +  G +
Subjt:  WSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISENSMKCSPHGAI

Query:  LNEIRCLLSLDMIISLKYISRSINHVAHNLAAWAWSRQSCEVWVE
        ++EI+ L S    ++  +  R  N VA++LA+W+      E+W +
Subjt:  LNEIRCLLSLDMIISLKYISRSINHVAHNLAAWAWSRQSCEVWVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.5e-0427.36Show/hide
Query:  RQEERHSADVGRD-RWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIK
        +Q    +AD  R+ +WSPP    LK N D +    +   GLG I+ +S G V+         ++ +   E  TL+  ++    +G   V  E D Q + +
Subjt:  RQEERHSADVGRD-RWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIK

Query:  AISENS
         I+  S
Subjt:  AISENS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAGGAAGAGAGACATTCTGCAGATGTGGGAAGAGATCGGTGGTCTCCTCCGGCTGTTGGAAGTCTTAAACTCAATATTGATGTTGCTTGTAGTCCGACGTCGAA
CAAAGTGGGGTTAGGGACTATCATCTGTGACTCATCTGGGGTGGTGGTGGTTGCTTCTTCTCATTTCCTCCCTTATCAGTTGGAGTCCTTTGCAGTGGAGGCTTTGACCC
TTCTTCACGGACTAAAGCTGGTTCGATATTGGGGGTTAATGAATGTTCATGTTGAAGCTGATGCTCAAGCGCTCATCAAAGCCATTTCTGAGAATAGTATGAAATGCTCT
CCTCATGGTGCAATTTTAAATGAAATCAGGTGTTTGTTGTCTTTGGATATGATTATTAGTCTAAAGTACATTTCTAGATCTATTAACCATGTGGCCCATAATTTAGCTGC
TTGGGCATGGTCTCGTCAGTCTTGTGAGGTGTGGGTTGAAAGCCCACATCTAATTGTTGTCATGTGTATCTATGGATGCTTCTTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAGGAAGAGAGACATTCTGCAGATGTGGGAAGAGATCGGTGGTCTCCTCCGGCTGTTGGAAGTCTTAAACTCAATATTGATGTTGCTTGTAGTCCGACGTCGAA
CAAAGTGGGGTTAGGGACTATCATCTGTGACTCATCTGGGGTGGTGGTGGTTGCTTCTTCTCATTTCCTCCCTTATCAGTTGGAGTCCTTTGCAGTGGAGGCTTTGACCC
TTCTTCACGGACTAAAGCTGGTTCGATATTGGGGGTTAATGAATGTTCATGTTGAAGCTGATGCTCAAGCGCTCATCAAAGCCATTTCTGAGAATAGTATGAAATGCTCT
CCTCATGGTGCAATTTTAAATGAAATCAGGTGTTTGTTGTCTTTGGATATGATTATTAGTCTAAAGTACATTTCTAGATCTATTAACCATGTGGCCCATAATTTAGCTGC
TTGGGCATGGTCTCGTCAGTCTTGTGAGGTGTGGGTTGAAAGCCCACATCTAATTGTTGTCATGTGTATCTATGGATGCTTCTTTTTGTAA
Protein sequenceShow/hide protein sequence
MRQEERHSADVGRDRWSPPAVGSLKLNIDVACSPTSNKVGLGTIICDSSGVVVVASSHFLPYQLESFAVEALTLLHGLKLVRYWGLMNVHVEADAQALIKAISENSMKCS
PHGAILNEIRCLLSLDMIISLKYISRSINHVAHNLAAWAWSRQSCEVWVESPHLIVVMCIYGCFFL