CuGenDBv2

Gene ID	HG10017599
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic
Genome location	Chr03:16611863..16612087
RNA-Seq Expression	HG10017599
Synteny	HG10017599
Gene Ontology terms	GO:0006633 - fatty acid biosynthetic process (biological process) GO:2001295 - malonyl-CoA biosynthetic process (biological process) GO:0009317 - acetyl-CoA carboxylase complex (cellular component) GO:0009570 - chloroplast stroma (cellular component) GO:0003989 - acetyl-CoA carboxylase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016743 - carboxyl- or carbamoyltransferase activity (molecular function)
InterPro domains	IPR011762 - Acetyl-coenzyme A carboxyltransferase, N-terminal IPR029045 - ClpP/crotonase-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88690.1 acetyl-CoA carboxylase carbosyltransferase beta subunit [Lagenaria siceraria]

5.3e-33

98.65

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQT TGKLNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

AHM88807.1 acetyl-CoA carboxylase carbosyltransferase beta subunit [Lagenaria siceraria]

5.3e-33

98.65

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQT TGKLNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

YP_009317395.1 acetyl-CoA carboxylase beta subunit [Coccinia grandis]

5.3e-33

98.65

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQT TGKLNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

YP_009420803.1 acetyl-CoA carboxylase beta subunit [Citrullus colocynthis]

5.3e-33

98.65

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQT TGKLNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

YP_009456155.1 acetyl-CoA carboxylase beta subunit [Lagenaria siceraria]

5.3e-33

98.65

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQT TGKLNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LF62 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta

2.6e-33

98.65

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQT TGKLNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

A0A1P8LFN2 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta

2.6e-33

98.65

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQT TGKLNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

A0A2Z2CG91 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

2.6e-33

98.65

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQT TGKLNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

X2EYN8 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

2.6e-33

98.65

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQT TGKLNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

X2F3Y8 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

2.6e-33

98.65

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQT TGKLNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

SwissProt top hits

e value

%identity

Alignment

Q09X08 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

5.9e-35

95.95

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEF+SEEEPYKDRIDSYQRKTGLTEA+QT TGKLNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

Q2MI91 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

1.3e-34

94.59

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEA+QT  G+LNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

Q2MIH8 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

1.3e-34

94.59

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEA+QT  G+LNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

Q33C25 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

1.3e-34

94.59

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEA+QT  G+LNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

Q3C1J3 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

1.3e-34

94.59

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEA+QT  G+LNGIPVAIGVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00500.1 acetyl-CoA carboxylase carboxyl transferase subunit beta

5.9e-30

79.73

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Query:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF
        MSSS+RIEL IDPGTW+PMDEDMVS DPI+FHS+EEPYK+RIDS Q+ TGLT+A+QT TG+LNGIPVA+GVMDF
Subjt:  MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

Sequences

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CDS sequence

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ATGAGTAGTTCAGATAGAATCGAACTTTTGATTGATCCAGGTACTTGGGACCCTATGGATGAAGACATGGTCTCTTTGGATCCCATTGAATTTCATTCGGAGGAGGAACC
TTATAAAGATCGTATTGATTCTTATCAAAGAAAGACAGGATTAACTGAGGCTATTCAAACAAGCACAGGTAAATTAAACGGTATTCCCGTAGCAATTGGGGTTATGGACT
TTTAG

mRNA sequence

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Protein sequence

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MSSSDRIELLIDPGTWDPMDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAIQTSTGKLNGIPVAIGVMDF

HG10017599 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome