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HG10017608 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017608
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr03:16773791..16778981
RNA-Seq ExpressionHG10017608
SyntenyHG10017608
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7802400.1 uncharacterized protein G2W53_041511 [Senna tora]1.2e-0634.03Show/hide
Query:  ETGFGGVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSD--SFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVS
        +T  G +I       LA ++      YSV  AEA+AVYEG+ +A+R+ + N+LV  D  S I   N  G    Y+     I+DI    S+FRS +F  V 
Subjt:  ETGFGGVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSD--SFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVS

Query:  RSSNQAAHLLARD------GSSGVSLLRLSSFPAMLSHLYLVDV
        R +N+ AH+LA D       +SG+ L+ L  +P+++ +    D+
Subjt:  RSSNQAAHLLARD------GSSGVSLLRLSSFPAMLSHLYLVDV

MBA0742079.1 hypothetical protein [Gossypium gossypioides]1.2e-0636.28Show/hide
Query:  ETGFGGVIGSESR-DILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSR
        E    G++  +SR D++A+     ER+ S    +A    E LRL   L + NL V  DS      A      + E+  Y+ED+K     F+S TF HV R
Subjt:  ETGFGGVIGSESR-DILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSR

Query:  SSNQAAHLLARDG
        S+N+AA+ LAR+G
Subjt:  SSNQAAHLLARDG

XP_021736582.1 uncharacterized protein LOC110703144 [Chenopodium quinoa]9.1e-0731.82Show/hide
Query:  GVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSRSSNQAA
        GV+G      +   +       S+  AEA+A   G+ +A R G  N+ + SDS    S    ++  Y  +FN  +DI+ C + F S  F H   S N  A
Subjt:  GVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSRSSNQAA

Query:  HLLARDGSSG-VSLLRLSSFPAMLSHLYLVDV
        HL+ARD +     L+R  SFP  +  L  +D+
Subjt:  HLLARDGSSG-VSLLRLSSFPAMLSHLYLVDV

XP_021746156.1 uncharacterized protein LOC110712039 [Chenopodium quinoa]2.0e-0636.45Show/hide
Query:  AEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSRSSNQAAHLLARDGSSGVS-LLRLSSFPAMLSH
        AEA+AV  G+ +A R G  N+ + SDS    S     +  +  +FN  +DI+ C + F S  F H  R  N  AHL+ARD     S L+R  SFP  +  
Subjt:  AEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSRSSNQAAHLLARDGSSGVS-LLRLSSFPAMLSH

Query:  LYLVDVR
        L  +D++
Subjt:  LYLVDVR

XP_024634787.1 uncharacterized protein LOC112420259 [Medicago truncatula]2.4e-0735.56Show/hide
Query:  TGFGGVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSRSS
        TGFGGVI S S   +   SG       +L AE  A+Y+GL+LA  L    L+  SDS ++ +  +G T  Y      I++IK  L++ R+ +  H  R  
Subjt:  TGFGGVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSRSS

Query:  NQAAHLLARDG-SSGVSLLRLSSFPAMLSHLYLVD
        N  A  +A+ G ++ V L   SS P  L  L L D
Subjt:  NQAAHLLARDG-SSGVSLLRLSSFPAMLSHLYLVD

TrEMBL top hitse value%identityAlignment
A0A2K3MPR0 Ribonuclease H2.2e-0634.53Show/hide
Query:  CETGFGGVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSR
        C  GFGGV+ + +   ++  SG       +L AE +A+Y GL LA+ LG  ++   SDS  S S  + +T  +      I++IK  L    +VT  H  R
Subjt:  CETGFGGVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSR

Query:  SSNQAAHLLARDG-SSGVSLLRLSSFPAMLSHLYLVDVR
          N  A  +A+ G SS V +L  SS P  L  L   D R
Subjt:  SSNQAAHLLARDG-SSGVSLLRLSSFPAMLSHLYLVDVR

A0A2Z6M8Z8 RNase H domain-containing protein1.3e-0634.96Show/hide
Query:  GFGGVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSRSSN
        GFGGVI +ES   L+  SG  +    +L AE  A+Y+GL LA+ + +  L+  SDS    +  +G +  Y      I+DIK  +S   ++T  H  R  N
Subjt:  GFGGVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSRSSN

Query:  QAAHLLARDGSSGVSLLRLSSFP
          A+ LA+ G+S  S L + + P
Subjt:  QAAHLLARDGSSGVSLLRLSSFP

A0A5A7P8T0 Ribonuclease H-like superfamily protein2.2e-0635.34Show/hide
Query:  GFGGVIGSESRDI-LATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSRSS
        G  GV    +  + L  LS   + +     AEA+A+ E + LA+RL + N+ V+ DS +    + G T         I+DI  CLS   SV  F + RS 
Subjt:  GFGGVIGSESRDI-LATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSRSS

Query:  NQAAHLLARDGSSGVSLLRL-SSFPAMLSHLYL
        N  AH LAR  +S  S + + S  P  LSHL L
Subjt:  NQAAHLLARDGSSGVSLLRL-SSFPAMLSHLYL

A0A7J9C0U1 RNase H domain-containing protein5.7e-0736.28Show/hide
Query:  ETGFGGVIGSESR-DILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSR
        E    G++  +SR D++A+     ER+ S    +A    E LRL   L + NL V  DS      A      + E+  Y+ED+K     F+S TF HV R
Subjt:  ETGFGGVIGSESR-DILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSR

Query:  SSNQAAHLLARDG
        S+N+AA+ LAR+G
Subjt:  SSNQAAHLLARDG

A0A7J9FHM4 RNase H domain-containing protein1.7e-0632.43Show/hide
Query:  GGVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSRSSNQA
        G VIG+ +  I+ +       +     AEA++  +GL  A  +G S L+V SD+    S         L++  YI+DIK    AFRS+ F    R++N+A
Subjt:  GGVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIEDIKCCLSAFRSVTFFHVSRSSNQA

Query:  AHLLARDGSSG
        +H++A++G  G
Subjt:  AHLLARDGSSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGAAAGGAGAAGGCAAAGAAATGAAGAAGAAGAAGAAGAAGAAGAGAAAAAGGGAAACCCAAGTCGAATTGAGAAAAGAAAATGTGAAACTGGTTTTGGTGGAGT
GATTGGTTCGGAGTCTAGAGATATTTTGGCTACTTTGTCTGGGCATCGTGAAAGATTGTATAGTGTATTGGGAGCTGAGGCCATTGCTGTGTATGAAGGTCTCAGGCTAG
CAGAGAGATTGGGTCTTTCTAATCTTCTGGTTCTTTCAGACTCTTTTATCTCTTATTCAAATGCTAGAGGAGCTACTGGTATCTACTTGGAGGTTTTTAATTATATTGAA
GATATCAAATGTTGTTTATCCGCTTTTCGGTCAGTGACTTTTTTCCATGTGTCAAGATCTTCCAATCAAGCGGCACACTTGTTGGCTCGTGATGGTTCGTCGGGTGTAAG
TCTTTTACGGCTCAGTTCTTTTCCGGCTATGTTGTCCCATTTGTATTTAGTGGATGTTCGTTGTTTGAACAACAATAAGACCATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCGAAAGGAGAAGGCAAAGAAATGAAGAAGAAGAAGAAGAAGAAGAGAAAAAGGGAAACCCAAGTCGAATTGAGAAAAGAAAATGTGAAACTGGTTTTGGTGGAGT
GATTGGTTCGGAGTCTAGAGATATTTTGGCTACTTTGTCTGGGCATCGTGAAAGATTGTATAGTGTATTGGGAGCTGAGGCCATTGCTGTGTATGAAGGTCTCAGGCTAG
CAGAGAGATTGGGTCTTTCTAATCTTCTGGTTCTTTCAGACTCTTTTATCTCTTATTCAAATGCTAGAGGAGCTACTGGTATCTACTTGGAGGTTTTTAATTATATTGAA
GATATCAAATGTTGTTTATCCGCTTTTCGGTCAGTGACTTTTTTCCATGTGTCAAGATCTTCCAATCAAGCGGCACACTTGTTGGCTCGTGATGGTTCGTCGGGTGTAAG
TCTTTTACGGCTCAGTTCTTTTCCGGCTATGTTGTCCCATTTGTATTTAGTGGATGTTCGTTGTTTGAACAACAATAAGACCATCTAG
Protein sequenceShow/hide protein sequence
MIERRRQRNEEEEEEEEKKGNPSRIEKRKCETGFGGVIGSESRDILATLSGHRERLYSVLGAEAIAVYEGLRLAERLGLSNLLVLSDSFISYSNARGATGIYLEVFNYIE
DIKCCLSAFRSVTFFHVSRSSNQAAHLLARDGSSGVSLLRLSSFPAMLSHLYLVDVRCLNNNKTI