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HG10017657 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017657
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotransposon protein
Genome locationChr03:17956070..17956411
RNA-Seq ExpressionHG10017657
SyntenyHG10017657
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8774639.1 hypothetical protein D1007_52870 [Hordeum vulgare]7.9e-0440.86Show/hide
Query:  VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCLEVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRR
        VLRDH+G V  +   FI    +V   E MAI  GL      +   I VESDCLE V + NDV  ++S  +F I E K    E    S +H+RR
Subjt:  VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCLEVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRR

XP_021753633.1 uncharacterized protein LOC110719026 [Chenopodium quinoa]2.2e-0637.25Show/hide
Query:  VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCLEVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRRVRTSLRT
        V+RD +G V   G+  I  S EV+  EA AI +GL   + L +  ++VESDCL+V+Q L +   D+SE+S  ID+     S    V +S+V+R    +  
Subjt:  VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCLEVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRRVRTSLRT

Query:  SW
         W
Subjt:  SW

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]2.1e-2059.6Show/hide
Query:  VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCL-EVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRRVRTSL
        V  DHL RV +AGL F+ R  +V  LEA+AIC+GLE +SS+++ +I+VESDCL EV+ LLND   D+SEVSF  +EAK RG  LGV+SFSHVRR R  L
Subjt:  VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCL-EVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRRVRTSL

TrEMBL top hitse value%identityAlignment
A0A6P6B6H9 uncharacterized protein LOC1113151816.5e-0433.33Show/hide
Query:  VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCLEVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRR
        ++RD  G V  A  I I ++N+   +EA A    L     +    I++E DCL V++ L ++E D+S +   I+EAK R S L      H+ R
Subjt:  VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCLEVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRR

A0A803MUM1 Uncharacterized protein7.0e-0635.71Show/hide
Query:  VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCLEVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRRVRTSL
        V+RDHLG V  AG   + +S +   +EA A+  GL+     N+  ++VESDC  +V+L+N V  D S +     E KC       + F+HV R   S+
Subjt:  VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCLEVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRRVRTSL

D9ZHD0 Retrotransposon protein5.0e-0437.63Show/hide
Query:  VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCLEVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRR
        V+RD  G   +A     P       LE  A+  GLE  ++L L  + +ESDCL VV  L+   TD S++S  ID+ K   S    V  +HVRR
Subjt:  VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCLEVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGCTTCGTGATCATCTCGGACGAGTTAGGCTTGCTGGTCTGATTTTTATTCCTCGGAGTAACGAGGTGAAGACTCTTGAGGCGATGGCTATTTGTTATGGGTTAGAGAG
TGTCTCTTCTTTAAACCTTCCTCATATTTTGGTGGAGTCTGACTGCCTTGAGGTTGTTCAGTTGCTTAATGATGTGGAGACAGATATCTCTGAAGTGTCTTTTTTCATTG
ATGAGGCCAAATGTAGGGGAAGTGAGCTTGGTGTTGTCTCTTTTTCTCATGTTAGGCGAGTCAGAACAAGCTTGCGCACCTCGTGGCGTATAAGGCGTTGGAGGAGCGTC
ATTCTTCCTTGA
mRNA sequenceShow/hide mRNA sequence
GTGCTTCGTGATCATCTCGGACGAGTTAGGCTTGCTGGTCTGATTTTTATTCCTCGGAGTAACGAGGTGAAGACTCTTGAGGCGATGGCTATTTGTTATGGGTTAGAGAG
TGTCTCTTCTTTAAACCTTCCTCATATTTTGGTGGAGTCTGACTGCCTTGAGGTTGTTCAGTTGCTTAATGATGTGGAGACAGATATCTCTGAAGTGTCTTTTTTCATTG
ATGAGGCCAAATGTAGGGGAAGTGAGCTTGGTGTTGTCTCTTTTTCTCATGTTAGGCGAGTCAGAACAAGCTTGCGCACCTCGTGGCGTATAAGGCGTTGGAGGAGCGTC
ATTCTTCCTTGA
Protein sequenceShow/hide protein sequence
VLRDHLGRVRLAGLIFIPRSNEVKTLEAMAICYGLESVSSLNLPHILVESDCLEVVQLLNDVETDISEVSFFIDEAKCRGSELGVVSFSHVRRVRTSLRTSWRIRRWRSV
ILP