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HG10017686 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017686
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationChr03:18887601..18888077
RNA-Seq ExpressionHG10017686
SyntenyHG10017686
Gene Ontology termsGO:0048507 - meristem development (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34152.1 hypothetical protein [Cucumis melo subsp. melo]2.7e-2659.46Show/hide
Query:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEG
        MVG+SLGVDM ++Q+EIIYRHPN T SG+VRFM FPI +EQ MN MFSIALP PN+V LYV VS +   INLN +P    E+ +D DP+S   P C +E 
Subjt:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEG

Query:  MVANNQYRDFK
        MVA N+Y +F+
Subjt:  MVANNQYRDFK

KAA0034014.1 uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]1.2e-2660.36Show/hide
Query:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEG
        MVG+SLGVDM ++Q+EIIYRHPN T SG+VRF+PFPI +EQ MN MFSIALP PN+V LYV VS V   INLN +P    E+ +D +PES   P C +E 
Subjt:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEG

Query:  MVANNQYRDFK
        MVA N+Y +F+
Subjt:  MVANNQYRDFK

KAA0041167.1 uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa]2.1e-4762.96Show/hide
Query:  MTDKCLGFVLFSNGHMI---DGVEYDQPASGGFSINVNSGIVFEQFIEMVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALP
        M DK LGF+LF NG+MI   DG++YDQPA GGF+I+VNSGIVFEQFIE+VG S+G+D+R + +EIIYRHP+ TPSG +RFMPFPIP+EQAM  MFSIA+P
Subjt:  MTDKCLGFVLFSNGHMI---DGVEYDQPASGGFSINVNSGIVFEQFIEMVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALP

Query:  LPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMD---PDPESVVP-ACDDEGMVANNQYRDFK
        + N+V LYVNVSRV  DINLN++ F Q ED      PD E V     DDE M+ANN   DF+
Subjt:  LPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMD---PDPESVVP-ACDDEGMVANNQYRDFK

TYJ95836.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]4.2e-2761.26Show/hide
Query:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEG
        MVG+SLGVDM ++Q+EIIYRHPN T SG+VRFMPFPI +EQ MN MFSIALP PN+V LYV VS V   INLN +P    E+ +D +PES   P C +E 
Subjt:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEG

Query:  MVANNQYRDFK
        MVA N+Y +F+
Subjt:  MVANNQYRDFK

TYK20962.1 hypothetical protein E5676_scaffold1293G00170 [Cucumis melo var. makuwa]6.5e-2862.16Show/hide
Query:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPESVV-PACDDEG
        MVG+SLGVDM  NQ+EIIYRHPN + SGSVRFM FPI +EQAMN MFSI LP  N+V LY+ VSRVG  INLN +  S++ + +  DPESV  P C +E 
Subjt:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPESVV-PACDDEG

Query:  MVANNQYRDFK
        +VANN+Y+DF+
Subjt:  MVANNQYRDFK

TrEMBL top hitse value%identityAlignment
A0A5A7SS31 DBD_Tnp_Mut domain-containing protein5.9e-2760.36Show/hide
Query:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEG
        MVG+SLGVDM ++Q+EIIYRHPN T SG+VRF+PFPI +EQ MN MFSIALP PN+V LYV VS V   INLN +P    E+ +D +PES   P C +E 
Subjt:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEG

Query:  MVANNQYRDFK
        MVA N+Y +F+
Subjt:  MVANNQYRDFK

A0A5A7THR5 Uncharacterized protein1.0e-4762.96Show/hide
Query:  MTDKCLGFVLFSNGHMI---DGVEYDQPASGGFSINVNSGIVFEQFIEMVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALP
        M DK LGF+LF NG+MI   DG++YDQPA GGF+I+VNSGIVFEQFIE+VG S+G+D+R + +EIIYRHP+ TPSG +RFMPFPIP+EQAM  MFSIA+P
Subjt:  MTDKCLGFVLFSNGHMI---DGVEYDQPASGGFSINVNSGIVFEQFIEMVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALP

Query:  LPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMD---PDPESVVP-ACDDEGMVANNQYRDFK
        + N+V LYVNVSRV  DINLN++ F Q ED      PD E V     DDE M+ANN   DF+
Subjt:  LPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMD---PDPESVVP-ACDDEGMVANNQYRDFK

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein2.0e-2761.26Show/hide
Query:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEG
        MVG+SLGVDM ++Q+EIIYRHPN T SG+VRFMPFPI +EQ MN MFSIALP PN+V LYV VS V   INLN +P    E+ +D +PES   P C +E 
Subjt:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEG

Query:  MVANNQYRDFK
        MVA N+Y +F+
Subjt:  MVANNQYRDFK

A0A5D3BFY6 Uncharacterized protein1.3e-2659.46Show/hide
Query:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEG
        MVG+SLGVDM ++Q+EIIYRHPN T SG+VRFM FPI +EQ MN MFSIALP PN+V LYV VS +   INLN +P    E+ +D DP+S   P C +E 
Subjt:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPES-VVPACDDEG

Query:  MVANNQYRDFK
        MVA N+Y +F+
Subjt:  MVANNQYRDFK

A0A5D3DBJ9 Uncharacterized protein3.1e-2862.16Show/hide
Query:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPESVV-PACDDEG
        MVG+SLGVDM  NQ+EIIYRHPN + SGSVRFM FPI +EQAMN MFSI LP  N+V LY+ VSRVG  INLN +  S++ + +  DPESV  P C +E 
Subjt:  MVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSRVGFDINLNAQPFSQFEDPMDPDPESVV-PACDDEG

Query:  MVANNQYRDFK
        +VANN+Y+DF+
Subjt:  MVANNQYRDFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGACAAATGTTTGGGATTTGTGTTATTTTCAAATGGTCATATGATTGATGGTGTTGAATATGACCAACCAGCTAGTGGAGGTTTTAGCATAAATGTGAACAGTGG
AATAGTTTTTGAACAATTCATTGAAATGGTAGGGATGTCACTTGGTGTAGATATGAGAGCAAATCAGTTAGAAATAATATATAGACATCCTAATCCAACACCATCAGGAT
CAGTAAGGTTTATGCCATTCCCTATTCCTGATGAACAAGCAATGAATCTGATGTTTTCAATCGCACTGCCACTCCCAAACTTAGTGGATTTATATGTTAATGTGAGTAGG
GTAGGGTTTGATATAAACTTGAATGCACAACCCTTTAGTCAATTTGAAGACCCGATGGACCCTGATCCTGAATCAGTTGTACCAGCCTGTGATGATGAAGGTATGGTGGC
TAATAATCAATACAGGGATTTTAAACACAGAGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAGACAAATGTTTGGGATTTGTGTTATTTTCAAATGGTCATATGATTGATGGTGTTGAATATGACCAACCAGCTAGTGGAGGTTTTAGCATAAATGTGAACAGTGG
AATAGTTTTTGAACAATTCATTGAAATGGTAGGGATGTCACTTGGTGTAGATATGAGAGCAAATCAGTTAGAAATAATATATAGACATCCTAATCCAACACCATCAGGAT
CAGTAAGGTTTATGCCATTCCCTATTCCTGATGAACAAGCAATGAATCTGATGTTTTCAATCGCACTGCCACTCCCAAACTTAGTGGATTTATATGTTAATGTGAGTAGG
GTAGGGTTTGATATAAACTTGAATGCACAACCCTTTAGTCAATTTGAAGACCCGATGGACCCTGATCCTGAATCAGTTGTACCAGCCTGTGATGATGAAGGTATGGTGGC
TAATAATCAATACAGGGATTTTAAACACAGAGACTGA
Protein sequenceShow/hide protein sequence
MTDKCLGFVLFSNGHMIDGVEYDQPASGGFSINVNSGIVFEQFIEMVGMSLGVDMRANQLEIIYRHPNPTPSGSVRFMPFPIPDEQAMNLMFSIALPLPNLVDLYVNVSR
VGFDINLNAQPFSQFEDPMDPDPESVVPACDDEGMVANNQYRDFKHRD