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HG10017699 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017699
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNA-dependent RNA polymerase
Genome locationChr03:19401535..19402255
RNA-Seq ExpressionHG10017699
SyntenyHG10017699
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1835825.1 unnamed protein product [Ananas comosus var. bracteatus]3.3e-2137.11Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFKRVLAMYTKP---------RGH--------------------------NDETLELWLERVQDFLEWSLLRNWMKDWLRYV
        +GG G+R +A+L H+RS +  RVLA+YT+          RG                            D+  E  +E ++DFLEWS+LR+W++ WLRY 
Subjt:  IGGGGYRVLAKLSHTRSRHFKRVLAMYTKP---------RGH--------------------------NDETLELWLERVQDFLEWSLLRNWMKDWLRYV

Query:  HWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPP
         WY + A  PD+++ + F A + E++WR+     +LI FGLLWK+YDLVA KG+ +  P
Subjt:  HWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPP

KAB1199680.1 hypothetical protein CJ030_MR0G017069 [Morella rubra]3.4e-3486.42Show/hide
Query:  ERVQDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSP
        ERV+DFLEWSLLRNWMKDWLRYVHWYW+VANSPD+SL+D F ASVYEK WRIR ESSELIRFGLLWKIYDLVAEKGV+  P
Subjt:  ERVQDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSP

KAB8477474.1 hypothetical protein FH972_025340 [Carpinus fangiana]3.4e-3442.71Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFKRVLAMYTKPRGHNDETLELWL-------------------------------------ERVQDFLEWSLLRNWMKDWLR
        +GG GYRVLA+L H R+RH  RV AMYTKP      TLE WL                                     E+V+DFLEWS+LR+WMK+WL 
Subjt:  IGGGGYRVLAKLSHTRSRHFKRVLAMYTKPRGHNDETLELWL-------------------------------------ERVQDFLEWSLLRNWMKDWLR

Query:  YVHWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPRFRG-WLLEGVSGIDFLVEPDGLT
        Y H Y+  A  PD+ ++  F  +V  + WRI  + + L RFGLLW++YDLVA KGV++  P L+ HL    G WLL G+SG  F+V+  G T
Subjt:  YVHWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPRFRG-WLLEGVSGIDFLVEPDGLT

KAF3452148.1 hypothetical protein FNV43_RR08246 [Rhamnella rubrinervis]1.3e-7082.39Show/hide
Query:  RVLAKLSHTRSRHFKRVLAMYTKPRGHNDETLELWLERVQ-----------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFLASVYEKEWRIR
        RVLAKLSHTRSRHF+RVLAMYTKPRGHND  LELWL RV             FLEWSLLRNWMKDWLRYVHWYW+VANSPD+SL+D F ASVYEKEWRIR
Subjt:  RVLAKLSHTRSRHFKRVLAMYTKPRGHNDETLELWLERVQ-----------DFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFLASVYEKEWRIR

Query:  HESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPRFRGWLLEGVSGIDFLVEPDGLT
         ESSELIRF LLWKIYDLVAEKGVAWSPPCLQEHLP FRGWLL GVSG+DFLVEPDG T
Subjt:  HESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPRFRGWLLEGVSGIDFLVEPDGLT

KAF9601036.1 hypothetical protein IFM89_015021 [Coptis chinensis]9.7e-2135.23Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFKRVLAMYTKP-RGHNDETLELWL-------------------------------------ERVQDFLEWSLLRNWMKDWL
        IGGGGY+ L KL   RSR  +R+ +M  K   GH    L LWL                                     E+VQ   E++ LR WMK+WL
Subjt:  IGGGGYRVLAKLSHTRSRHFKRVLAMYTKP-RGHNDETLELWL-------------------------------------ERVQDFLEWSLLRNWMKDWL

Query:  RYVHWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPRFRG--WLLEGVSGIDFLVEPDGL
         Y+ WY  VA  PD SL+  F A +    W+   +   LI+FGLLW+++DLV + G+ + PP L+      +   WLL G+ G  +LV  DGL
Subjt:  RYVHWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPRFRG--WLLEGVSGIDFLVEPDGL

TrEMBL top hitse value%identityAlignment
A0A2Z6JSN1 RNA-dependent RNA polymerase2.6e-1943.12Show/hide
Query:  QDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-LASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPRFRGWLLEGVSGI
        ++F E +L+ NW+K WL+Y+ WY +VA SPD+++   F    +    W +R  + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG 
Subjt:  QDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-LASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPRFRGWLLEGVSGI

Query:  DFLVEPDGL
        DF+V   GL
Subjt:  DFLVEPDGL

A0A482F2N2 RNA-dependent RNA polymerase2.6e-1943.12Show/hide
Query:  QDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-LASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPRFRGWLLEGVSGI
        ++F E +L+ NW+K WL+Y+ WY +VA SPD+++   F    +    W +R  + EL+RFG+LWK YD VA  G+ W P  L E      GW+L G SG 
Subjt:  QDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGF-LASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPRFRGWLLEGVSGI

Query:  DFLVEPDGL
        DF+V   GL
Subjt:  DFLVEPDGL

A0A5N6L0Z4 Uncharacterized protein1.7e-3442.71Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFKRVLAMYTKPRGHNDETLELWL-------------------------------------ERVQDFLEWSLLRNWMKDWLR
        +GG GYRVLA+L H R+RH  RV AMYTKP      TLE WL                                     E+V+DFLEWS+LR+WMK+WL 
Subjt:  IGGGGYRVLAKLSHTRSRHFKRVLAMYTKPRGHNDETLELWL-------------------------------------ERVQDFLEWSLLRNWMKDWLR

Query:  YVHWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPRFRG-WLLEGVSGIDFLVEPDGLT
        Y H Y+  A  PD+ ++  F  +V  + WRI  + + L RFGLLW++YDLVA KGV++  P L+ HL    G WLL G+SG  F+V+  G T
Subjt:  YVHWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPPCLQEHLPRFRG-WLLEGVSGIDFLVEPDGLT

A0A6A1UKL6 Uncharacterized protein1.7e-3486.42Show/hide
Query:  ERVQDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSP
        ERV+DFLEWSLLRNWMKDWLRYVHWYW+VANSPD+SL+D F ASVYEK WRIR ESSELIRFGLLWKIYDLVAEKGV+  P
Subjt:  ERVQDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSP

A0A6V7PYJ7 Uncharacterized protein1.6e-2137.11Show/hide
Query:  IGGGGYRVLAKLSHTRSRHFKRVLAMYTKP---------RGH--------------------------NDETLELWLERVQDFLEWSLLRNWMKDWLRYV
        +GG G+R +A+L H+RS +  RVLA+YT+          RG                            D+  E  +E ++DFLEWS+LR+W++ WLRY 
Subjt:  IGGGGYRVLAKLSHTRSRHFKRVLAMYTKP---------RGH--------------------------NDETLELWLERVQDFLEWSLLRNWMKDWLRYV

Query:  HWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPP
         WY + A  PD+++ + F A + E++WR+     +LI FGLLWK+YDLVA KG+ +  P
Subjt:  HWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWKIYDLVAEKGVAWSPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTAAGCGGGTTCTTGCTATGTACACCAAGCCTCGGGGTCACAATGACGA
GACATTAGAATTGTGGCTTGAAAGAGTCCAGGACTTCCTTGAGTGGTCTTTGCTCAGGAACTGGATGAAGGATTGGCTTCGGTACGTCCATTGGTACTGGAATGTCGCGA
ATTCACCGGATCTTTCCTTAAATGATGGATTTTTAGCATCAGTCTATGAGAAAGAATGGAGGATCAGACACGAATCGAGTGAGCTCATTCGCTTTGGTCTTCTCTGGAAG
ATCTATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACACCTCCCTAGATTTCGGGGATGGTTACTAGAAGGAGTCTCCGGCATTGATTT
CTTAGTCGAGCCTGATGGTTTAACCGGCTTTGAAAGGGATCATCATAAGACTTTAGACGCACCTGGGGAAGGACTACCCTTTTTTGAATATATGCAATTAATAAACGATA
CCGAATTAACTGATAAAGAGACGAAACTAACAACTGCCATAATGGACCTAAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGATAGGTGGTGGAGGTTATAGGGTCCTTGCCAAACTCAGTCATACAAGATCTCGTCACTTTAAGCGGGTTCTTGCTATGTACACCAAGCCTCGGGGTCACAATGACGA
GACATTAGAATTGTGGCTTGAAAGAGTCCAGGACTTCCTTGAGTGGTCTTTGCTCAGGAACTGGATGAAGGATTGGCTTCGGTACGTCCATTGGTACTGGAATGTCGCGA
ATTCACCGGATCTTTCCTTAAATGATGGATTTTTAGCATCAGTCTATGAGAAAGAATGGAGGATCAGACACGAATCGAGTGAGCTCATTCGCTTTGGTCTTCTCTGGAAG
ATCTATGATTTGGTAGCAGAGAAGGGTGTAGCTTGGAGCCCGCCATGTCTTCAAGAACACCTCCCTAGATTTCGGGGATGGTTACTAGAAGGAGTCTCCGGCATTGATTT
CTTAGTCGAGCCTGATGGTTTAACCGGCTTTGAAAGGGATCATCATAAGACTTTAGACGCACCTGGGGAAGGACTACCCTTTTTTGAATATATGCAATTAATAAACGATA
CCGAATTAACTGATAAAGAGACGAAACTAACAACTGCCATAATGGACCTAAACTAA
Protein sequenceShow/hide protein sequence
MIGGGGYRVLAKLSHTRSRHFKRVLAMYTKPRGHNDETLELWLERVQDFLEWSLLRNWMKDWLRYVHWYWNVANSPDLSLNDGFLASVYEKEWRIRHESSELIRFGLLWK
IYDLVAEKGVAWSPPCLQEHLPRFRGWLLEGVSGIDFLVEPDGLTGFERDHHKTLDAPGEGLPFFEYMQLINDTELTDKETKLTTAIMDLN