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HG10017701 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017701
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60s ribosomal protein l2, mitochondrial
Genome locationChr03:19414311..19417041
RNA-Seq ExpressionHG10017701
SyntenyHG10017701
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OIT06415.1 60s ribosomal protein l2, mitochondrial [Nicotiana attenuata]5.8e-07100Show/hide
Query:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
        LTSKHLIGERGNAHEAPAEREGLPGRMPMG
Subjt:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
OVA06704.1 Ribosomal protein L2 [Macleaya cordata]5.8e-07100Show/hide
Query:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
        LTSKHLIGERGNAHEAPAEREGLPGRMPMG
Subjt:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
PKI31774.1 hypothetical protein CRG98_047835 [Punica granatum]1.3e-0673.91Show/hide
Query:  LTSKHLIGERGNAHEAPAEREGLPGRMPM-GLSRTPVEQLIKKRFP
        LTSKHLIGERGNAHEAPAEREGLPGRMPM       + +L K RFP
Subjt:  LTSKHLIGERGNAHEAPAEREGLPGRMPM-GLSRTPVEQLIKKRFP
TXG46243.1 hypothetical protein EZV62_028274 [Acer yangbiense]5.8e-07100Show/hide
Query:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
        LTSKHLIGERGNAHEAPAEREGLPGRMPMG
Subjt:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
XP_022866432.1 uncharacterized protein LOC111386211 [Olea europaea var. sylvestris]5.8e-07100Show/hide
Query:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
        LTSKHLIGERGNAHEAPAEREGLPGRMPMG
Subjt:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
TrEMBL top hitse value%identityAlignment
A0A1J6J9A5 60s ribosomal protein l2, mitochondrial2.8e-07100Show/hide
Query:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
        LTSKHLIGERGNAHEAPAEREGLPGRMPMG
Subjt:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
A0A1J6KG38 60s ribosomal protein l2, mitochondrial8.2e-0796.67Show/hide
Query:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
        LTSKHLIGERGNAHEAPAEREGLPGR+PMG
Subjt:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
A0A200Q8E8 Ribosomal protein L22.8e-07100Show/hide
Query:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
        LTSKHLIGERGNAHEAPAEREGLPGRMPMG
Subjt:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
A0A2I0HJB4 Uncharacterized protein6.3e-0773.91Show/hide
Query:  LTSKHLIGERGNAHEAPAEREGLPGRMPM-GLSRTPVEQLIKKRFP
        LTSKHLIGERGNAHEAPAEREGLPGRMPM       + +L K RFP
Subjt:  LTSKHLIGERGNAHEAPAEREGLPGRMPM-GLSRTPVEQLIKKRFP
A0A5C7GNV6 Uncharacterized protein2.8e-07100Show/hide
Query:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
        LTSKHLIGERGNAHEAPAEREGLPGRMPMG
Subjt:  LTSKHLIGERGNAHEAPAEREGLPGRMPMG
SwissProt top hitse value%identityAlignment
Q49KT9 Uncharacterized protein ycf682.1e-0796.3Show/hide
Query:  AVRALSHMDSSMCSSAPDPEMWIIQGS
        AVRALSHMDSSMCSSAPDPEMWIIQG+
Subjt:  AVRALSHMDSSMCSSAPDPEMWIIQGS
Arabidopsis top hitse value%identityAlignment
AT2G07715.1 Nucleic acid-binding, OB-fold-like protein9.5e-0856.86Show/hide
Query:  QEEPIPRKTKKRLGSDPSLL-LTSKHLIGERGNAHEAPAEREGLPGRMPMG
        +EE    K  +  GS  S+  +   +LIGERGN HEAP EREGLPGRMPMG
Subjt:  QEEPIPRKTKKRLGSDPSLL-LTSKHLIGERGNAHEAPAEREGLPGRMPMG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGGATAAGGTTGCAAGAAGAACCTATCCCGAGGAAGACTAAAAAAAGACTTGGGTCAGATCCTTCCTTGCTTCTCACATCCAAACATCTGATTGGGGAACGGGG
CAACGCCCATGAAGCTCCAGCGGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTCTTTCTCGTACACCTGTAGAGCAGCTCATCAAAAAACGTTTCCCAAGTCGTG
TTGAGCTTCCTAGCCGCCGTGTCCTATCCCGCCCTTTTGGAATACCTTTCCTTACTTTAGGGCTTGCTTTCCTGCCTTCGTTAGTTGGGTTGGAGGAAGGAAGAGGGCAT
TTCCATCGCGAAGGATTCAATCCAGCCACAGGAGCGAAGCTGAGGAGCATCCACTTTTTTGCTTTGACAGCTCAACACGCTGTGAGGGCTCTTAGCCACATGGATAGTTC
AATGTGCTCATCAGCGCCTGACCCTGAGATGTGGATCATCCAAGGCAGCGAAATACTCTACTTTACTATACGATCACTGAAAAAGAGTGAAGTGAGACACCTAAGTGTCG
CACGAACGATAGCACACTACGATAGTAGTGGGACAGTAGTGCGTGGCATTCAATTGCAAACAGAACACTGGTTAGTTGAGCTGCTACAACAGGAGCTGAATATGCAACAG
CAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCTACTCTCGACCTTATCGATAGACAATCTGCCTCCCTAAAGATGGAAACTCTAACCCGGACAGAAGAAGATTA
TGTAAACACTTACTTGAAATCTCACTTGGAGACATTGAGTCCGCATGAGAAAGATGGGAGACTCCCCTGTACCTCTTTAGGGGAATGTATGAGTCCCCTGGAATTCCTTC
CAAAGCTTGTGAATAATTTTTACGGATTCCGTCATCTCAGAAGGCACGGGGAAGGAGGTACCCCAGGCCCCAGGGTTGGGCAGTGGACCCCATGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGGATAAGGTTGCAAGAAGAACCTATCCCGAGGAAGACTAAAAAAAGACTTGGGTCAGATCCTTCCTTGCTTCTCACATCCAAACATCTGATTGGGGAACGGGG
CAACGCCCATGAAGCTCCAGCGGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTCTTTCTCGTACACCTGTAGAGCAGCTCATCAAAAAACGTTTCCCAAGTCGTG
TTGAGCTTCCTAGCCGCCGTGTCCTATCCCGCCCTTTTGGAATACCTTTCCTTACTTTAGGGCTTGCTTTCCTGCCTTCGTTAGTTGGGTTGGAGGAAGGAAGAGGGCAT
TTCCATCGCGAAGGATTCAATCCAGCCACAGGAGCGAAGCTGAGGAGCATCCACTTTTTTGCTTTGACAGCTCAACACGCTGTGAGGGCTCTTAGCCACATGGATAGTTC
AATGTGCTCATCAGCGCCTGACCCTGAGATGTGGATCATCCAAGGCAGCGAAATACTCTACTTTACTATACGATCACTGAAAAAGAGTGAAGTGAGACACCTAAGTGTCG
CACGAACGATAGCACACTACGATAGTAGTGGGACAGTAGTGCGTGGCATTCAATTGCAAACAGAACACTGGTTAGTTGAGCTGCTACAACAGGAGCTGAATATGCAACAG
CAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCTACTCTCGACCTTATCGATAGACAATCTGCCTCCCTAAAGATGGAAACTCTAACCCGGACAGAAGAAGATTA
TGTAAACACTTACTTGAAATCTCACTTGGAGACATTGAGTCCGCATGAGAAAGATGGGAGACTCCCCTGTACCTCTTTAGGGGAATGTATGAGTCCCCTGGAATTCCTTC
CAAAGCTTGTGAATAATTTTTACGGATTCCGTCATCTCAGAAGGCACGGGGAAGGAGGTACCCCAGGCCCCAGGGTTGGGCAGTGGACCCCATGCTGA
Protein sequenceShow/hide protein sequence
MKGIRLQEEPIPRKTKKRLGSDPSLLLTSKHLIGERGNAHEAPAEREGLPGRMPMGLSRTPVEQLIKKRFPSRVELPSRRVLSRPFGIPFLTLGLAFLPSLVGLEEGRGH
FHREGFNPATGAKLRSIHFFALTAQHAVRALSHMDSSMCSSAPDPEMWIIQGSEILYFTIRSLKKSEVRHLSVARTIAHYDSSGTVVRGIQLQTEHWLVELLQQELNMQQ
QSKDAYPDGNSVPTLDLIDRQSASLKMETLTRTEEDYVNTYLKSHLETLSPHEKDGRLPCTSLGECMSPLEFLPKLVNNFYGFRHLRRHGEGGTPGPRVGQWTPC