CuGenDBv2

Gene ID	HG10017706
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	transcription termination factor MTEF18, mitochondrial-like
Genome location	Chr03:19493776..19494213
RNA-Seq Expression	HG10017706
Synteny	HG10017706
Gene Ontology terms	GO:0006353 - DNA-templated transcription, termination (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009658 - chloroplast organization (biological process) GO:0032502 - developmental process (biological process) GO:0009507 - chloroplast (cellular component) GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domains	IPR003690 - Transcription termination factor, mitochondrial/chloroplastic IPR038538 - MTERF superfamily, mitochondrial/chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6595584.1 Transcription termination factor MTEF18, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

8.8e-48

78.74

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Query:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL
        MGS M QI SVFLQFPQ+RVGKF+SN+R+ +  FNE++ GVQ+IGYLFRSHPLLLGSCTLKKTN+LLS LNVGKKRLCQFILEN EELKNW+ GTRV  L
Subjt:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL

Query:  PTTGEAIRFKQQKTQFLLKLGLEENSS
        P  GE +R KQQKTQFLLKLGLEENSS
Subjt:  PTTGEAIRFKQQKTQFLLKLGLEENSS

KAG7027564.1 Transcription termination factor MTEF18, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.8e-48

78.74

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Query:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL
        MGS M QI SVFLQFPQ+RVGKF+SN+R+ +  FNE++ GVQ+IGYLFRSHPLLLGSCTLKKTN+LLS LNVGKKRLCQFILEN EELKNW+ GTRV  L
Subjt:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL

Query:  PTTGEAIRFKQQKTQFLLKLGLEENSS
        P  GE +R KQQKTQFLLKLGLEENSS
Subjt:  PTTGEAIRFKQQKTQFLLKLGLEENSS

XP_022158597.1 transcription termination factor MTEF18, mitochondrial-like [Momordica charantia]

1.7e-46

78.74

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Query:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL
        MGSSM QICS+F+QFPQIRVGKFVSN+RR +  FNE++ GV+EIGYL RS PLLLGS TLKKTN+LL+ LNVGKKRLCQFILEN EELKNWK GTRV  L
Subjt:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL

Query:  PTTGEAIRFKQQKTQFLLKLGLEENSS
        P  GE  R KQQKTQFLLKLGLEENSS
Subjt:  PTTGEAIRFKQQKTQFLLKLGLEENSS

XP_022925228.1 transcription termination factor MTEF18, mitochondrial-like isoform X1 [Cucurbita moschata]

1.1e-45

78.74

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Query:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL
        MGSSM QI SVFLQFPQ+RVGKFVSN+R+ +  FNE++ GVQ+IGYLFRSHPLLLGSCTLKKTN+LLS LNVGKKRL Q ILEN EELKNW+ GTRV  L
Subjt:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL

Query:  PTTGEAIRFKQQKTQFLLKLGLEENSS
        P  GE  R KQQKTQFLLKLGLEENSS
Subjt:  PTTGEAIRFKQQKTQFLLKLGLEENSS

XP_022966246.1 transcription termination factor MTEF18, mitochondrial-like [Cucurbita maxima]

4.8e-46

78.74

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Query:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL
        MGS M QI SVFLQFPQ+RVGKFVSN+RR +  FNE++  VQ+IGYLFRSHPLLLGSCTLKKTN+LLS LNVGKKRLCQFILEN EELKNWK  TRV  L
Subjt:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL

Query:  PTTGEAIRFKQQKTQFLLKLGLEENSS
        P  GE +R KQQKTQFLLKLGL+ENSS
Subjt:  PTTGEAIRFKQQKTQFLLKLGLEENSS

TrEMBL top hits

e value

%identity

Alignment

A0A5D3DAD9 Transcription termination factor MTEF18

4.1e-43

74.42

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Query:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL
        MG SM QICSVFLQFPQIRVGKFVSNMR  +  FNE++ GVQEIGYLFRSHPLLLG CTLKKT++LL  LN GKKR+CQFILEN EELKNWK GTRV +L
Subjt:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL

Query:  PTTGEAIR--FKQQKTQFLLKLGLEENSS
        P  G   +    QQK QFLLKLGLEENS+
Subjt:  PTTGEAIR--FKQQKTQFLLKLGLEENSS

A0A6J1DXM2 transcription termination factor MTEF18, mitochondrial-like

8.0e-47

78.74

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Query:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL
        MGSSM QICS+F+QFPQIRVGKFVSN+RR +  FNE++ GV+EIGYL RS PLLLGS TLKKTN+LL+ LNVGKKRLCQFILEN EELKNWK GTRV  L
Subjt:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL

Query:  PTTGEAIRFKQQKTQFLLKLGLEENSS
        P  GE  R KQQKTQFLLKLGLEENSS
Subjt:  PTTGEAIRFKQQKTQFLLKLGLEENSS

A0A6J1EEL8 transcription termination factor MTEF18, mitochondrial-like isoform X1

5.2e-46

78.74

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Query:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL
        MGSSM QI SVFLQFPQ+RVGKFVSN+R+ +  FNE++ GVQ+IGYLFRSHPLLLGSCTLKKTN+LLS LNVGKKRL Q ILEN EELKNW+ GTRV  L
Subjt:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL

Query:  PTTGEAIRFKQQKTQFLLKLGLEENSS
        P  GE  R KQQKTQFLLKLGLEENSS
Subjt:  PTTGEAIRFKQQKTQFLLKLGLEENSS

A0A6J1EHC5 transcription termination factor MTEF18, mitochondrial-like isoform X2

5.2e-46

78.74

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Query:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL
        MGSSM QI SVFLQFPQ+RVGKFVSN+R+ +  FNE++ GVQ+IGYLFRSHPLLLGSCTLKKTN+LLS LNVGKKRL Q ILEN EELKNW+ GTRV  L
Subjt:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL

Query:  PTTGEAIRFKQQKTQFLLKLGLEENSS
        P  GE  R KQQKTQFLLKLGLEENSS
Subjt:  PTTGEAIRFKQQKTQFLLKLGLEENSS

A0A6J1HNT9 transcription termination factor MTEF18, mitochondrial-like

2.3e-46

78.74

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Query:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL
        MGS M QI SVFLQFPQ+RVGKFVSN+RR +  FNE++  VQ+IGYLFRSHPLLLGSCTLKKTN+LLS LNVGKKRLCQFILEN EELKNWK  TRV  L
Subjt:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL

Query:  PTTGEAIRFKQQKTQFLLKLGLEENSS
        P  GE +R KQQKTQFLLKLGL+ENSS
Subjt:  PTTGEAIRFKQQKTQFLLKLGLEENSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G19650.1 Mitochondrial transcription termination factor family protein

7.3e-08

28.8

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Query:  GSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRLP
        G  + +I  +F+  P++   K V N+++ +     +    Q I  +  SH  L+GSC+L    T    LNV +  LC+ + +    L  +   T+  +  
Subjt:  GSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRLP

Query:  TTGEAIRFKQQKTQFLLKLGLEENS
           E  R   +KT+FLL+LG  ENS
Subjt:  TTGEAIRFKQQKTQFLLKLGLEENS

AT5G06810.1 Mitochondrial transcription termination factor family protein

2.4e-27

49.21

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Query:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL
        +G+S  ++CS+F +FP I+V K VSN+R+      E+E    EI  +FRSH   LGSC LKKT++LL  L  GK R+CQ I EN EE+K W  G+++  L
Subjt:  MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRL

Query:  PTTGEAIRFKQQKTQFLLKLGLEENS
        P T   I  K  KTQFLL LG +ENS
Subjt:  PTTGEAIRFKQQKTQFLLKLGLEENS

Sequences

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CDS sequence

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ATGGGATCCTCAATGAGGCAGATATGTTCGGTGTTCCTGCAATTCCCTCAAATCCGAGTTGGTAAGTTTGTTTCAAATATGAGGCGCGGTGTTTGGATCTTCAATGAAAT
GGAGACGGGTGTGCAAGAGATAGGATACCTTTTCAGATCTCATCCTTTGTTATTGGGATCGTGTACTCTGAAAAAGACTAACACCTTGCTCTCTAAGTTGAATGTTGGGA
AAAAACGGCTTTGTCAATTCATCTTAGAGAATCTAGAAGAATTGAAGAACTGGAAGCGCGGGACAAGAGTTCCACGACTACCAACCACAGGAGAGGCTATAAGATTTAAG
CAACAGAAAACTCAGTTCTTGTTAAAATTAGGACTCGAAGAAAACTCGAGCGGTCCGATTGTATTGTGGAAGCTGGCATTGATGAGAACTAATCCAACCAAAAGATAG

mRNA sequence

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Protein sequence

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MGSSMRQICSVFLQFPQIRVGKFVSNMRRGVWIFNEMETGVQEIGYLFRSHPLLLGSCTLKKTNTLLSKLNVGKKRLCQFILENLEELKNWKRGTRVPRLPTTGEAIRFK
QQKTQFLLKLGLEENSSGPIVLWKLALMRTNPTKR

HG10017706 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome