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HG10017740 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017740
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionpolyamine-modulated factor 1-binding protein 1
Genome locationChr03:20856943..20857257
RNA-Seq ExpressionHG10017740
SyntenyHG10017740
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063670.1 cingulin [Cucumis melo var. makuwa]3.0e-3483.33Show/hide
Query:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL
        MD DSKLQSLKSLNE+LLKEMVEKRV V DLV++KEALELDLKRNVN KEQ MGELS+ARD VYGLELERNV  VYLQS IEEM GGI+G+LESERVKGL
Subjt:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL

Query:  EL
        E+
Subjt:  EL

XP_008455286.1 PREDICTED: cingulin [Cucumis melo]3.0e-3483.33Show/hide
Query:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL
        MD DSKLQSLKSLNE+LLKEMVEKRV V DLV++KEALELDLKRNVN KEQ MGELS+ARD VYGLELERNV  VYLQS IEEM GGI+G+LESERVKGL
Subjt:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL

Query:  EL
        E+
Subjt:  EL

XP_011648795.1 desmoplakin [Cucumis sativus]3.6e-3585.29Show/hide
Query:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL
        MD DSKLQSLKSLNE+LLKEMVEKRVEV DLV+SKEALELDLKRNVN KEQ MGELS+ARD VYGLELERNV  VYLQS I+EMGGGI G+LESERVKGL
Subjt:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL

Query:  EL
        E+
Subjt:  EL

XP_022150832.1 myosin-2 heavy chain, non muscle-like [Momordica charantia]1.0e-2160.19Show/hide
Query:  KLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVL----ESERVKGLE
        KLQSLKSLN++L+KE  E+R+EV  LVK+K+ALE+DLKRNV+ K Q MGEL +A + +YGL+LE+NV  V+LQS +EEMGGGI G++    ESER+K +E
Subjt:  KLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVL----ESERVKGLE

Query:  LGI
        +G+
Subjt:  LGI

XP_038889361.1 paramyosin-like [Benincasa hispida]3.7e-3279.41Show/hide
Query:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL
        MD DSKLQSLKSLNE+LLK++VEKRVEV DLV SKEALELDLKRNV+ KEQ MGEL++ARD VYGLELERNV  VYLQS +EEMG G+ G+LESERVKGL
Subjt:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL

Query:  EL
        E+
Subjt:  EL

TrEMBL top hitse value%identityAlignment
A0A0A0LII4 Uncharacterized protein1.7e-3585.29Show/hide
Query:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL
        MD DSKLQSLKSLNE+LLKEMVEKRVEV DLV+SKEALELDLKRNVN KEQ MGELS+ARD VYGLELERNV  VYLQS I+EMGGGI G+LESERVKGL
Subjt:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL

Query:  EL
        E+
Subjt:  EL

A0A1S3C0Q0 cingulin1.5e-3483.33Show/hide
Query:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL
        MD DSKLQSLKSLNE+LLKEMVEKRV V DLV++KEALELDLKRNVN KEQ MGELS+ARD VYGLELERNV  VYLQS IEEM GGI+G+LESERVKGL
Subjt:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL

Query:  EL
        E+
Subjt:  EL

A0A5D3D489 Cingulin1.5e-3483.33Show/hide
Query:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL
        MD DSKLQSLKSLNE+LLKEMVEKRV V DLV++KEALELDLKRNVN KEQ MGELS+ARD VYGLELERNV  VYLQS IEEM GGI+G+LESERVKGL
Subjt:  MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGL

Query:  EL
        E+
Subjt:  EL

A0A6J1DBU6 myosin-2 heavy chain, non muscle-like4.9e-2260.19Show/hide
Query:  KLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVL----ESERVKGLE
        KLQSLKSLN++L+KE  E+R+EV  LVK+K+ALE+DLKRNV+ K Q MGEL +A + +YGL+LE+NV  V+LQS +EEMGGGI G++    ESER+K +E
Subjt:  KLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVL----ESERVKGLE

Query:  LGI
        +G+
Subjt:  LGI

A0A6J1FD80 polyamine-modulated factor 1-binding protein 11.6e-2064.65Show/hide
Query:  SKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGLELG
        S+LQSLKSLNE+LLKE  EKR E   LV++KE LELDLK+N + K+Q M ELS A D V GLELERNV  VYLQ+ +EEMGG I  ++ESERVK +E+G
Subjt:  SKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGLELG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G05130.1 BEST Arabidopsis thaliana protein match is: Prefoldin chaperone subunit family protein (TAIR:AT5G27330.1)1.2e-0737.78Show/hide
Query:  DHDS---KLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGI
        +HDS   + Q+LKSLN  LLK+ +EKR ++  LV++K+ LE +L R    K     EL +  D  +GL+ E +   V+++S   EM  G+
Subjt:  DHDS---KLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGI

AT5G27330.1 Prefoldin chaperone subunit family protein7.5e-0736.78Show/hide
Query:  DHDS---KLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMG
        DHDS   K Q+LKSLN  LLK+ +EKR ++  L ++K++LE++L R+   K     EL  + D  + L++E ++   +++  ++EMG
Subjt:  DHDS---KLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCATGACTCGAAGTTGCAGAGCTTGAAATCATTGAACGAACAACTTCTTAAGGAGATGGTCGAGAAGAGAGTGGAGGTCAGTGATCTTGTGAAGAGTAAAGAAGC
ATTGGAACTCGACTTGAAGCGGAATGTGAACGCGAAAGAACAAGAAATGGGTGAGTTGAGTAAGGCTCGTGATTGGGTTTATGGGTTGGAATTGGAAAGAAATGTGGATT
TTGTTTATTTGCAGAGTTTAATAGAAGAAATGGGTGGTGGGATTTATGGGGTACTCGAGAGTGAAAGAGTTAAGGGTTTAGAATTAGGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCATGACTCGAAGTTGCAGAGCTTGAAATCATTGAACGAACAACTTCTTAAGGAGATGGTCGAGAAGAGAGTGGAGGTCAGTGATCTTGTGAAGAGTAAAGAAGC
ATTGGAACTCGACTTGAAGCGGAATGTGAACGCGAAAGAACAAGAAATGGGTGAGTTGAGTAAGGCTCGTGATTGGGTTTATGGGTTGGAATTGGAAAGAAATGTGGATT
TTGTTTATTTGCAGAGTTTAATAGAAGAAATGGGTGGTGGGATTTATGGGGTACTCGAGAGTGAAAGAGTTAAGGGTTTAGAATTAGGAATTTGA
Protein sequenceShow/hide protein sequence
MDHDSKLQSLKSLNEQLLKEMVEKRVEVSDLVKSKEALELDLKRNVNAKEQEMGELSKARDWVYGLELERNVDFVYLQSLIEEMGGGIYGVLESERVKGLELGI