CuGenDBv2

Gene ID	HG10017748
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	exosome complex component RRP43
Genome location	Chr03:21022231..21027732
RNA-Seq Expression	HG10017748
Synteny	HG10017748
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR015847 - Exoribonuclease, phosphorolytic domain 2 IPR027408 - PNPase/RNase PH domain superfamily IPR036345 - Exoribonuclease, PH domain 2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYK02492.1 exosome complex component RRP43 isoform X1 [Cucumis melo var. makuwa]

6.2e-57

93.7

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Query:  VQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ
        +QIPVVALNDDG+VVFVS EEGGE+FEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ
Subjt:  VQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ

Query:  DCVALTRQRSNELQMILDEAISGMEID
        DC+ALTRQRS ELQ+ILDEAISGMEID
Subjt:  DCVALTRQRSNELQMILDEAISGMEID

XP_004149399.1 exosome complex component RRP43 isoform X1 [Cucumis sativus]

6.2e-57

92.31

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Query:  FESVQIPVVALNDDGKVVFV-SEEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
        F  +QIPVVALNDDGKVVFV  EEGGE+FEKEPVNKE RKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
Subjt:  FESVQIPVVALNDDGKVVFV-SEEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS

Query:  AVQDCVALTRQRSNELQMILDEAISGMEID
        AVQDC+ALTRQRS ELQ+ILDEAISGMEID
Subjt:  AVQDCVALTRQRSNELQMILDEAISGMEID

XP_008460772.1 PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]

1.6e-57

92.31

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Query:  FESVQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
        F  +QIPVVALNDDG+VVFVS EEGGE+FEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
Subjt:  FESVQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS

Query:  AVQDCVALTRQRSNELQMILDEAISGMEID
        AVQDC+ALTRQRS ELQ+ILDEAISGMEID
Subjt:  AVQDCVALTRQRSNELQMILDEAISGMEID

XP_008460773.1 PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo]

1.6e-57

92.31

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Query:  FESVQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
        F  +QIPVVALNDDG+VVFVS EEGGE+FEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
Subjt:  FESVQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS

Query:  AVQDCVALTRQRSNELQMILDEAISGMEID
        AVQDC+ALTRQRS ELQ+ILDEAISGMEID
Subjt:  AVQDCVALTRQRSNELQMILDEAISGMEID

XP_038877146.1 exosome complex component RRP43 isoform X2 [Benincasa hispida]

1.3e-57

93.08

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Query:  FESVQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
        F  ++IPVVALNDDGKV+FVS EEGGE+FEKEPVNKE+RKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
Subjt:  FESVQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS

Query:  AVQDCVALTRQRSNELQMILDEAISGMEID
        AVQDCVALTRQRS ELQMILDEAISGMEID
Subjt:  AVQDCVALTRQRSNELQMILDEAISGMEID

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYC2 RNase_PH_C domain-containing protein

3.9e-57

93.75

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Query:  SVQIPVVALNDDGKVVFV-SEEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAV
        +VQIPVVALNDDGKVVFV  EEGGE+FEKEPVNKE RKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAV
Subjt:  SVQIPVVALNDDGKVVFV-SEEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAV

Query:  QDCVALTRQRSNELQMILDEAISGMEID
        QDC+ALTRQRS ELQ+ILDEAISGMEID
Subjt:  QDCVALTRQRSNELQMILDEAISGMEID

A0A1S3CD66 exosome complex component RRP43 isoform X1

7.9e-58

92.31

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Query:  FESVQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
        F  +QIPVVALNDDG+VVFVS EEGGE+FEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
Subjt:  FESVQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS

Query:  AVQDCVALTRQRSNELQMILDEAISGMEID
        AVQDC+ALTRQRS ELQ+ILDEAISGMEID
Subjt:  AVQDCVALTRQRSNELQMILDEAISGMEID

A0A1S3CEE1 exosome complex component RRP43 isoform X2

7.9e-58

92.31

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Query:  FESVQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
        F  +QIPVVALNDDG+VVFVS EEGGE+FEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
Subjt:  FESVQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS

Query:  AVQDCVALTRQRSNELQMILDEAISGMEID
        AVQDC+ALTRQRS ELQ+ILDEAISGMEID
Subjt:  AVQDCVALTRQRSNELQMILDEAISGMEID

A0A5D3BUK6 Exosome complex component RRP43 isoform X1

3.0e-57

93.7

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Query:  VQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ
        +QIPVVALNDDG+VVFVS EEGGE+FEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ
Subjt:  VQIPVVALNDDGKVVFVS-EEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSAVQ

Query:  DCVALTRQRSNELQMILDEAISGMEID
        DC+ALTRQRS ELQ+ILDEAISGMEID
Subjt:  DCVALTRQRSNELQMILDEAISGMEID

A0A6J1HVL5 exosome complex component RRP43

3.9e-57

93.08

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Query:  FESVQIPVVALNDDGKVVFVSEE-GGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
        F  +QIPVVALNDDGKVVFVSEE GGE+FEKE VNKEKRKLKLNS+PFSLTCLLHK YILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS
Subjt:  FESVQIPVVALNDDGKVVFVSEE-GGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTS

Query:  AVQDCVALTRQRSNELQMILDEAISGMEID
        AVQDCVALTRQRS ELQMILDEAISGMEID
Subjt:  AVQDCVALTRQRSNELQMILDEAISGMEID

SwissProt top hits

e value

%identity

Alignment

Q2KHU3 Exosome complex component RRP43

2.1e-07

28.35

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Query:  ESVQIPVVALNDDGKVVFVSEEGGESFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSA
        ++VQ+P V +N++  +  V+             K+K  L + + P + +  +     ++ DPT EEE +    +TVV+D  G+L   +KPGGS L   + 
Subjt:  ESVQIPVVALNDDGKVVFVSEEGGESFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSA

Query:  VQDCVALTRQRSNELQMILDEAISGME
        +QDC++    R  E++ ++DE    M+
Subjt:  VQDCVALTRQRSNELQMILDEAISGME

Q96B26 Exosome complex component RRP43

5.6e-08

28.35

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Query:  ESVQIPVVALNDDGKVVFVSEEGGESFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSA
        ++VQ+P V +N++  +  V+             K+K  L + + P + +  +     ++ DPT EEE +    +T+V+D  G+L   +KPGGS L   + 
Subjt:  ESVQIPVVALNDDGKVVFVSEEGGESFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLAYTSA

Query:  VQDCVALTRQRSNELQMILDEAISGME
        +QDC++    R  E++ ++DE I  M+
Subjt:  VQDCVALTRQRSNELQMILDEAISGME

Arabidopsis top hits

e value

%identity

Alignment

AT1G60080.1 3'-5'-exoribonuclease family protein

8.2e-39

61.65

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Query:  FESVQIPVVALNDDGKVVFVSEEGGES----FEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLA
        F ++QIP+VALND+G++V V+ E  +      EKE VNKEKRKL L +IPFSLTC+LHK YILADPT EEES+M+T+VTVVLDSS Q+VSFYK GG+ LA
Subjt:  FESVQIPVVALNDDGKVVFVSEEGGES----FEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKPGGSVLA

Query:  YTSAVQDCVALTRQRSNELQMILDEAISGMEID
        Y+SA++ CV L R+R+ EL+ IL E    M+ID
Subjt:  YTSAVQDCVALTRQRSNELQMILDEAISGMEID

Sequences

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CDS sequence

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ATGCCTTCACAAGTGGGATTTGGATTTGGAACGTATGATGAGAAATCTTTTTGGGAAGGGTTCGAGAGTGTGCAAATCCCTGTCGTTGCTCTAAATGATGATGGAAAAGT
AGTATTTGTCTCTGAGGAAGGAGGAGAAAGCTTTGAGAAGGAACCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCTATTCCTTTTTCATTAACATGCCTACTCC
ACAAGAAGTACATCTTGGCTGATCCTACTGCAGAGGAAGAGTCCGTCATGGAAACTATTGTAACCGTGGTTTTGGATTCATCTGGTCAACTGGTGTCCTTCTATAAACCT
GGTGGATCCGTTCTTGCTTATACATCAGCTGTTCAGGATTGCGTTGCATTGACCCGACAAAGATCAAACGAACTACAGATGATTTTAGATGAAGCAATTTCTGGTATGGA
AATTGACTAA

mRNA sequence

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Protein sequence

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MPSQVGFGFGTYDEKSFWEGFESVQIPVVALNDDGKVVFVSEEGGESFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSGQLVSFYKP
GGSVLAYTSAVQDCVALTRQRSNELQMILDEAISGMEID

HG10017748 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome