CuGenDBv2

Gene ID	HG10017767
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Phloem lectin
Genome location	Chr03:21756418..21756789
RNA-Seq Expression	HG10017767
Synteny	HG10017767
Gene Ontology terms	NA
InterPro domains	IPR025886 - Phloem protein 2-like

Homology

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GenBank top hits

e value

%identity

Alignment

AAA92465.1 phloem protein 2 [Cucurbita argyrosperma]

3.2e-22

46.15

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT
        VSW D+ G ++ S+LSPN++Y +          +GWN P+N+ LKKP+GS IE    L+GKP  ++FEI V E  +DNHGC   G IE   YEHG  WK+
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT

Query:  GLIMKGLLARSKASEGC
        GL++KG+   +K   GC
Subjt:  GLIMKGLLARSKASEGC

KAG6583766.1 hypothetical protein SDJN03_19698, partial [Cucurbita argyrosperma subsp. sororia]

5.4e-22

46.15

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT
        VSW D+ G +  S+LSPN++Y +          +GWN P+N+ LKKP+GS IE    L+GKP  ++FEI V E  +DNHGC   G IE   YEHG  WK+
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT

Query:  GLIMKGLLARSKASEGC
        GL++KG+   +K   GC
Subjt:  GLIMKGLLARSKASEGC

WP_181002512.1 PP2 domain-containing protein, partial [Pectobacterium odoriferum]

6.5e-36

59.5

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT
        V+WFDV G+V+ SLLS  +LYL+ FV  F ++  GW+ PVN+VLKKP+G  IES V++ GKP GEYFE+D GEL LDN GC   G+IE  +YEHG+  K 
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT

Query:  GLIMKGLLARSKASEGCPHAD
        GL+MKG++ RSKAS+GCPHA+
Subjt:  GLIMKGLLARSKASEGCPHAD

WP_219729244.1 PP2 domain-containing protein, partial [Pectobacterium odoriferum]

6.5e-36

59.5

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT
        V+WFDV G+V+ SLLS  +LYL+ FV  F ++  GW+ PVN+VLKKP+G  IES V++ GKP GEYFE+D GEL LDN GC   G+IE  +YEHG+  K 
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT

Query:  GLIMKGLLARSKASEGCPHAD
        GL+MKG++ RSKAS+GCPHA+
Subjt:  GLIMKGLLARSKASEGCPHAD

XP_038893562.1 lectin-like [Benincasa hispida]

4.4e-32

53.78

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT
        VSWFD+ G+V+ S LS  V+YL+ F+ + T++ +GWN  VN+ +KKP+G  +E+ VSL GKP GE+FE+  G+  LDN GC   GV+E  +YEHG  WK 
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT

Query:  GLIMKGLLARSKASEGCPH
        GLI+KG++ RSKAS GCPH
Subjt:  GLIMKGLLARSKASEGCPH

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EHQ4 lectin-like

1.7e-21

45.3

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT
        VSW D+ G ++  +LSPN++Y++          +GWN P+N+ LKKPDGS IE    L+GKP  ++FEI V E  +DN GC   G IE   YEHG  WK+
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT

Query:  GLIMKGLLARSKASEGC
        GL++KG+   +K   GC
Subjt:  GLIMKGLLARSKASEGC

A0A6J1EI65 lectin-like

4.9e-21

43.59

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT
        VSW D+ G ++ S+LSPN++Y +           GWN P+N+ LKKPDGS IE    L+GK   ++ EI + E  +DNHGC   G IE   YEHG  WK 
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT

Query:  GLIMKGLLARSKASEGC
        G+++KG+   +K   GC
Subjt:  GLIMKGLLARSKASEGC

Q39461 Phloem protein 2

1.5e-22

46.15

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT
        VSW D+ G ++ S+LSPN++Y +          +GWN P+N+ LKKP+GS IE    L+GKP  ++FEI V E  +DNHGC   G IE   YEHG  WK+
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT

Query:  GLIMKGLLARSKASEGC
        GL++KG+   +K   GC
Subjt:  GLIMKGLLARSKASEGC

Q8LK67 Phloem lectin

9.9e-22

45.3

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT
        VSW D+ G +  S+LSPN++Y +          +GWN P+N+ LKKP+GS IE    L+GKP  ++FEI V E  +DNHGC   G IE   +EHG  WK 
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT

Query:  GLIMKGLLARSKASEGC
        GL++KG+   +K   GC
Subjt:  GLIMKGLLARSKASEGC

Q9LLT3 Phloem protein 2

1.1e-20

44.44

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT
        VSW D+ G +  S+LSPN++Y +          +GW+ P+N+ LKKPDGS I     L+GKP  ++FEI V E  + NHGC   G IE   YEHG  WK 
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKT

Query:  GLIMKGLLARSKASEGC
        GL++KG+   +K   GC
Subjt:  GLIMKGLLARSKASEGC

SwissProt top hits

e value

%identity

Alignment

C0HJV2 Lectin

1.9e-14

41.23

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGE--GVIEGRIYEHGTQW
        V W ++ G + TS+LSP + Y   F  + T + +GW  PV+V LK PDGS  ES V+L  KP G +F I VG   +      GE  G IE  I +H  + 
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGE--GVIEGRIYEHGTQW

Query:  KTGLIMKGLLARSK
        K GL++KGL+ + K
Subjt:  KTGLIMKGLLARSK

P0DSP5 Lectin

9.9e-11

36.27

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTL-DNHGCRGEGVIEGRIYEHGTQWK
        VSWFD   TV T+ L  NV Y +          +GWN P+N+ L+ P+GS   S V L  +P   +F++ +G L + D+  C   G +   +Y H T WK
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTL-DNHGCRGEGVIEGRIYEHGTQWK

Query:  TG
         G
Subjt:  TG

Q9C8U9 Uncharacterized protein PHLOEM PROTEIN 2-LIKE A4

4.8e-05

31.3

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKP-VGE-YFEIDVGELTLDNHGCRGEGVIEGRIYE-HGTQ
        V W DV+G   T  L+    Y + +V       +GWN PVN+ L  PDG       S+  K  +G+ + +I  GE           G I   +YE     
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKP-VGE-YFEIDVGELTLDNHGCRGEGVIEGRIYE-HGTQ

Query:  WKTGLIMKGLLARSK
        WK GL +K +  R K
Subjt:  WKTGLIMKGLLARSK

Arabidopsis top hits

e value

%identity

Alignment

AT1G33920.1 phloem protein 2-A4

3.4e-06

31.3

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKP-VGE-YFEIDVGELTLDNHGCRGEGVIEGRIYE-HGTQ
        V W DV+G   T  L+    Y + +V       +GWN PVN+ L  PDG       S+  K  +G+ + +I  GE           G I   +YE     
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKP-VGE-YFEIDVGELTLDNHGCRGEGVIEGRIYE-HGTQ

Query:  WKTGLIMKGLLARSK
        WK GL +K +  R K
Subjt:  WKTGLIMKGLLARSK

AT5G45080.1 phloem protein 2-A6

9.2e-04

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLK
        V W  + GT+ T  L+P   Y   FV     N +GW  PVN+ LK
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLK

AT5G45090.1 phloem protein 2-A7

1.3e-05

29.57

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Query:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLK--KPDG--SIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGT
        V W  +SG   T  L+P   Y + F+       +GW  PVN+ LK   PDG  S+ E   SL       + +I  G L         +  +   +Y++ T
Subjt:  VSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLK--KPDG--SIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGT

Query:  -QWKTGLIMKGLLAR
           K+GL++KG+  R
Subjt:  -QWKTGLIMKGLLAR

Sequences

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CDS sequence

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ATGGTAAGTTGGTTCGATGTTAGTGGAACAGTGAGGACATCTTTGCTCTCACCAAATGTATTATATTTAATAACATTTGTGGCATTGTTCACTAAGAATCCCACCGGATG
GAATGGTCCTGTGAACGTGGTACTAAAGAAGCCAGATGGGAGCATAATAGAGAGCACAGTAAGCCTAGTGGGGAAGCCAGTAGGAGAGTATTTCGAGATAGATGTGGGGG
AACTCACACTTGATAACCACGGATGCCGCGGTGAGGGCGTGATCGAGGGTCGCATATATGAACACGGAACTCAATGGAAAACTGGGTTGATCATGAAAGGTCTTCTGGCT
CGATCAAAGGCCTCAGAAGGCTGCCCCCATGCTGATGGCTAG

mRNA sequence

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Protein sequence

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MVSWFDVSGTVRTSLLSPNVLYLITFVALFTKNPTGWNGPVNVVLKKPDGSIIESTVSLVGKPVGEYFEIDVGELTLDNHGCRGEGVIEGRIYEHGTQWKTGLIMKGLLA
RSKASEGCPHADG

HG10017767 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome