; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10017820 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017820
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSWIM-type domain-containing protein
Genome locationChr03:23566092..23566772
RNA-Seq ExpressionHG10017820
SyntenyHG10017820
Gene Ontology termsNA
InterPro domainsIPR004332 - Transposase, MuDR, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648182.1 hypothetical protein Csa_018486 [Cucumis sativus]1.8e-0752.63Show/hide
Query:  LLLGLNLGDCESAYASSSNLKSPCLFDEDKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKG
        L +  N+GDC+ AYASSSNLKS  L + DK++ NYLEFRY  DM DVTFQ                EAIK+Y VKG
Subjt:  LLLGLNLGDCESAYASSSNLKSPCLFDEDKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKG

KAG5528735.1 hypothetical protein RHGRI_029406 [Rhododendron griersonianum]8.1e-0824.57Show/hide
Query:  LIFHFNGQLVVTDNYQYVGGTEITKVDGGTEITKVVDKDMLSIIELNALMSKVNVFNIECYWYLKPDFELHRDLCLIRHDGDILSMVSLIRGDNTWHTYV
        L  H  G      N  YVGG +I  +DG       +D D+LS+IEL  +   +       + Y  P   L   L  ++ D D++++V+ +    T   YV
Subjt:  LIFHFNGQLVVTDNYQYVGGTEITKVDGGTEITKVVDKDMLSIIELNALMSKVNVFNIECYWYLKPDFELHRDLCLIRHDGDILSMVSLIRGDNTWHTYV

Query:  QHKFG-------------------------------------KNDLISDRSNDSSIDMDLLLGLNLGD----------------CES-------------
        +H  G                                     + +L SD S +  +  D    ++  D                CES             
Subjt:  QHKFG-------------------------------------KNDLISDRSNDSSIDMDLLLGLNLGD----------------CES-------------

Query:  ------AYASSSNLKSPCLFDEDKEVCNYLEFRYPK-DMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGC
              AY  + +  +    D+D       E ++ K  +E       F+VGMKFS+    K A+K++A+K   NVK VKNDK RVR  C  GC
Subjt:  ------AYASSSNLKSPCLFDEDKEVCNYLEFRYPK-DMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGC

ONK76041.1 uncharacterized protein A4U43_C03F23240 [Asparagus officinalis]4.8e-0843.18Show/hide
Query:  SAYASSSNLKSPCLFDEDKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGCK
        S YA S NLKSP   D+++E   Y EF +     D      F+VG  FS  +  K A+K+YA+KG Y+V+  KN+ +R R+IC G CK
Subjt:  SAYASSSNLKSPCLFDEDKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGCK

XP_020258800.1 uncharacterized protein LOC109835226 [Asparagus officinalis]4.8e-0843.18Show/hide
Query:  SAYASSSNLKSPCLFDEDKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGCK
        S YA S NLKSP   D+++E   Y EF +     D      F+VG  FS  +  K A+K+YA+KG Y+V+  KN+ +R R+IC G CK
Subjt:  SAYASSSNLKSPCLFDEDKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGCK

XP_022153708.1 uncharacterized protein LOC111021158 [Momordica charantia]1.4e-0724.12Show/hide
Query:  HFNGQLVVTDNYQYVGGTEITKVDGGTEITKVVDKDMLSIIELNALMSKVNVFNIECYWYLKPDFELHRDLCLIRHDGDILSMVSLIRGDNTWHTYVQHK
        H  G  +     +Y+ G    KVD  T      D D  S  E+  ++ ++  ++    W   P  E+     LI  D D++ + SL+     +  YV+H+
Subjt:  HFNGQLVVTDNYQYVGGTEITKVDGGTEITKVVDKDMLSIIELNALMSKVNVFNIECYWYLKPDFELHRDLCLIRHDGDILSMVSLIRGDNTWHTYVQHK

Query:  FGKNDLISDRSNDSSIDMDLLLGLNLGDCESAYASSSNLKSPCLFDEDKE-----------------------VCNYLEFRYPKDMEDVTFQV-------
             ++ D  +D+   +  + G     CES +    +L S    D+D E                         +  E    KD  D    V       
Subjt:  FGKNDLISDRSNDSSIDMDLLLGLNLGDCESAYASSSNLKSPCLFDEDKE-----------------------VCNYLEFRYPKDMEDVTFQV-------

Query:  ---------TFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGCK
                  F++GM F++    K  + +YAVKG + ++ VKNDK RVR  C  GCK
Subjt:  ---------TFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGCK

TrEMBL top hitse value%identityAlignment
A0A199UEJ4 CCHC-type domain-containing protein (Fragment)1.7e-0638.38Show/hide
Query:  LGDCESAYASSSNLKSPCLFDE-------DKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGC
        + D E  YA+ S+ +S  LF E       D E+  Y EFR   DM++      F +GM F++ +  ++AI+EY++K  YN+K+VKN++ +VR IC  GC
Subjt:  LGDCESAYASSSNLKSPCLFDE-------DKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGC

A0A3Q0FA39 uncharacterized protein LOC1112422604.8e-0638.18Show/hide
Query:  ISDRSNDSSIDMDLLLGLNLGDCESAYASSSNLKSPCLFDEDKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDK
        +SD   D SI+ D   GL+  D ES     S ++S C  DE +    ++ F  PK M D      + VG  F+ K+   +AIK YAV+   N+K +KNDK
Subjt:  ISDRSNDSSIDMDLLLGLNLGDCESAYASSSNLKSPCLFDEDKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDK

Query:  RRVRVICTGG
        +R+RV   GG
Subjt:  RRVRVICTGG

A0A5P1FHB9 SWIM-type domain-containing protein2.3e-0843.18Show/hide
Query:  SAYASSSNLKSPCLFDEDKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGCK
        S YA S NLKSP   D+++E   Y EF +     D      F+VG  FS  +  K A+K+YA+KG Y+V+  KN+ +R R+IC G CK
Subjt:  SAYASSSNLKSPCLFDEDKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGCK

A0A6J1DI69 uncharacterized protein LOC1110211586.7e-0824.12Show/hide
Query:  HFNGQLVVTDNYQYVGGTEITKVDGGTEITKVVDKDMLSIIELNALMSKVNVFNIECYWYLKPDFELHRDLCLIRHDGDILSMVSLIRGDNTWHTYVQHK
        H  G  +     +Y+ G    KVD  T      D D  S  E+  ++ ++  ++    W   P  E+     LI  D D++ + SL+     +  YV+H+
Subjt:  HFNGQLVVTDNYQYVGGTEITKVDGGTEITKVVDKDMLSIIELNALMSKVNVFNIECYWYLKPDFELHRDLCLIRHDGDILSMVSLIRGDNTWHTYVQHK

Query:  FGKNDLISDRSNDSSIDMDLLLGLNLGDCESAYASSSNLKSPCLFDEDKE-----------------------VCNYLEFRYPKDMEDVTFQV-------
             ++ D  +D+   +  + G     CES +    +L S    D+D E                         +  E    KD  D    V       
Subjt:  FGKNDLISDRSNDSSIDMDLLLGLNLGDCESAYASSSNLKSPCLFDEDKE-----------------------VCNYLEFRYPKDMEDVTFQV-------

Query:  ---------TFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGCK
                  F++GM F++    K  + +YAVKG + ++ VKNDK RVR  C  GCK
Subjt:  ---------TFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGCK

A0A6P5EAS5 uncharacterized protein LOC1097040551.7e-0631.33Show/hide
Query:  DLCLIRHDGDILSMVSLIRGDNTWHTYVQHKFGKNDLISDRSNDSSIDMDLLLGLNLGDCESAYASSSNLKSPCLFDEDKEVC--NYLEFRYPKDMEDVT
        D   I  D D+     L   +   H  V  +   +  I D   DS+ D D             Y  S  L S     ED  V    Y EFR   DM++  
Subjt:  DLCLIRHDGDILSMVSLIRGDNTWHTYVQHKFGKNDLISDRSNDSSIDMDLLLGLNLGDCESAYASSSNLKSPCLFDEDKEVC--NYLEFRYPKDMEDVT

Query:  FQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGC
            F +GM F++ +  ++AI+EY++K  YN+K+VKN+K +VR +C  GC
Subjt:  FQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVICTGGC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAACATTAATCTCATATTCCATTTCAATGGTCAGCTTGTTGTAACTGATAATTATCAATATGTTGGAGGGACTGAGATTACTAAGGTTGATGGAGGGACTGAGAT
TACTAAGGTTGTTGATAAGGACATGTTATCTATCATTGAGTTAAATGCATTAATGTCAAAAGTAAATGTATTTAATATTGAATGTTATTGGTATTTGAAGCCTGATTTCG
AACTACATCGCGATTTATGTTTAATCCGTCACGATGGTGATATTTTAAGTATGGTAAGTCTCATTCGTGGGGATAACACTTGGCACACATATGTTCAACATAAGTTTGGA
AAGAATGATTTAATTTCTGATAGGTCAAATGACTCATCTATTGATATGGATTTATTATTGGGTTTAAATCTTGGAGATTGTGAATCTGCTTATGCGTCATCTTCTAATTT
AAAGTCTCCATGTTTATTTGATGAAGATAAAGAGGTGTGTAACTATCTAGAATTTAGATATCCGAAGGATATGGAGGATGTTACATTTCAAGTTACATTTCAAGTAGGAA
TGAAATTTAGCACTAAGGAGGTGTTAAAGGAAGCTATAAAGGAATATGCTGTGAAAGGCGCGTATAATGTGAAAATGGTGAAGAATGATAAAAGGCGAGTTAGGGTTATT
TGTACTGGTGGATGTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAACATTAATCTCATATTCCATTTCAATGGTCAGCTTGTTGTAACTGATAATTATCAATATGTTGGAGGGACTGAGATTACTAAGGTTGATGGAGGGACTGAGAT
TACTAAGGTTGTTGATAAGGACATGTTATCTATCATTGAGTTAAATGCATTAATGTCAAAAGTAAATGTATTTAATATTGAATGTTATTGGTATTTGAAGCCTGATTTCG
AACTACATCGCGATTTATGTTTAATCCGTCACGATGGTGATATTTTAAGTATGGTAAGTCTCATTCGTGGGGATAACACTTGGCACACATATGTTCAACATAAGTTTGGA
AAGAATGATTTAATTTCTGATAGGTCAAATGACTCATCTATTGATATGGATTTATTATTGGGTTTAAATCTTGGAGATTGTGAATCTGCTTATGCGTCATCTTCTAATTT
AAAGTCTCCATGTTTATTTGATGAAGATAAAGAGGTGTGTAACTATCTAGAATTTAGATATCCGAAGGATATGGAGGATGTTACATTTCAAGTTACATTTCAAGTAGGAA
TGAAATTTAGCACTAAGGAGGTGTTAAAGGAAGCTATAAAGGAATATGCTGTGAAAGGCGCGTATAATGTGAAAATGGTGAAGAATGATAAAAGGCGAGTTAGGGTTATT
TGTACTGGTGGATGTAAATGA
Protein sequenceShow/hide protein sequence
MDNINLIFHFNGQLVVTDNYQYVGGTEITKVDGGTEITKVVDKDMLSIIELNALMSKVNVFNIECYWYLKPDFELHRDLCLIRHDGDILSMVSLIRGDNTWHTYVQHKFG
KNDLISDRSNDSSIDMDLLLGLNLGDCESAYASSSNLKSPCLFDEDKEVCNYLEFRYPKDMEDVTFQVTFQVGMKFSTKEVLKEAIKEYAVKGAYNVKMVKNDKRRVRVI
CTGGCK