CuGenDBv2

Gene ID	HG10017825
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Arabinogalactan peptide 23-like
Genome location	Chr03:23626123..23626311
RNA-Seq Expression	HG10017825
Synteny	HG10017825
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044702 - Arabinogalactan protein 23/40

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035760.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]

1.1e-15

83.87

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ
        MEMKNF CAAF+AV ASLSMVLA++EAA+PAPGP+SG SATLPVVGTLLGAS ASLIAY LQ
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ

KAE8649766.1 hypothetical protein Csa_011936, partial [Cucumis sativus]

3.9e-13

82.76

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Query:  NFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ
        NF CAAF+ VAASLSMVLA++EAA+PAPGP+S ASATLPVVGTLLGAS ASLIAY LQ
Subjt:  NFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ

PNT29922.1 hypothetical protein POPTR_006G056200 [Populus trichocarpa]

2.0e-09

67.74

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ
        ME+K  +CA  V VAAS+S  LAA+E +APAP PTSGASATLPVVG+L+GAS+ S  AYYLQ
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ

PON58107.1 hypothetical protein PanWU01x14_168770 [Parasponia andersonii]

1.7e-08

68.85

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYL
        ME+K  + A  VA AASLS V+AANE  APAPGP+SGASATLPVVG+L+GAS+ S  AYYL
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYL

PON91671.1 hypothetical protein TorRG33x02_125020 [Trema orientale]

1.7e-08

68.85

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYL
        ME+K  + A  VA AASLS V+AANE  APAPGP+SGASATLPVVG+L+GAS+ S  AYYL
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYL

TrEMBL top hits

e value

%identity

Alignment

A0A059DIY4 Uncharacterized protein (Fragment)

1.1e-08

64.52

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ
        M+MK  +CA  VA AAS+S VLA++++ APAPGP+SGASA LPV G+L+GASV S  AYYLQ
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ

A0A2K1ZXB0 Uncharacterized protein

9.8e-10

67.74

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ
        ME+K  +CA  V VAAS+S  LAA+E +APAP PTSGASATLPVVG+L+GAS+ S  AYYLQ
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ

A0A2P5CAP7 Uncharacterized protein

8.3e-09

68.85

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYL
        ME+K  + A  VA AASLS V+AANE  APAPGP+SGASATLPVVG+L+GAS+ S  AYYL
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYL

A0A2P5F1L3 Uncharacterized protein

8.3e-09

68.85

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYL
        ME+K  + A  VA AASLS V+AANE  APAPGP+SGASATLPVVG+L+GAS+ S  AYYL
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYL

A0A5D3E271 Arabinogalactan peptide 23-like

5.3e-16

83.87

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ
        MEMKNF CAAF+AV ASLSMVLA++EAA+PAPGP+SG SATLPVVGTLLGAS ASLIAY LQ
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ

SwissProt top hits

e value

%identity

Alignment

Q8S2W4 Arabinogalactan protein 23

1.8e-08

57.38

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYL
        MEMK   C    A AAS++ V+AA E  APAPGP S ASA LP +G+L+GAS+ SL +YYL
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYL

Arabidopsis top hits

e value

%identity

Alignment

AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)

7.6e-07

56.45

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGP-TSGASATLPVVGTLLGASVASLIAYYL
        MEMK   C   V  AAS++ V+AA E  APAPGP  SGAS  +P +G+L+GAS+ SL AYYL
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGP-TSGASATLPVVGTLLGASVASLIAYYL

AT3G20865.1 arabinogalactan protein 40

6.1e-04

38.71

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ
        MEMKN   A F++     S+  A  E+ AP+PG +S ++   PVVG+++ AS+++ +A  LQ
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ

AT3G57690.1 arabinogalactan protein 23

1.3e-09

57.38

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Query:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYL
        MEMK   C    A AAS++ V+AA E  APAPGP S ASA LP +G+L+GAS+ SL +YYL
Subjt:  MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYL

Sequences

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CDS sequence

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ATGGAAATGAAGAACTTCACCTGTGCCGCCTTCGTCGCTGTTGCTGCCTCCCTGAGCATGGTTTTGGCTGCCAATGAAGCGGCAGCCCCAGCACCCGGCCCAACCAGCGG
TGCTTCGGCTACTTTGCCCGTCGTCGGGACGTTGCTAGGTGCATCTGTTGCCTCTCTCATTGCCTACTACCTTCAGTAA

mRNA sequence

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ATGGAAATGAAGAACTTCACCTGTGCCGCCTTCGTCGCTGTTGCTGCCTCCCTGAGCATGGTTTTGGCTGCCAATGAAGCGGCAGCCCCAGCACCCGGCCCAACCAGCGG
TGCTTCGGCTACTTTGCCCGTCGTCGGGACGTTGCTAGGTGCATCTGTTGCCTCTCTCATTGCCTACTACCTTCAGTAA

Protein sequence

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MEMKNFTCAAFVAVAASLSMVLAANEAAAPAPGPTSGASATLPVVGTLLGASVASLIAYYLQ

HG10017825 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome