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HG10017829 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017829
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description40S ribosomal protein S25
Genome locationChr03:23729568..23732257
RNA-Seq ExpressionHG10017829
SyntenyHG10017829
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR004977 - Ribosomal protein S25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFK40360.1 unknown [Lotus japonicus]3.6e-4694.44Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKLITPSILSDRLR+NGSLARRAIR+LMARGSIR++SAH+SQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

XP_004144662.1 40S ribosomal protein S25-2 [Cucumis sativus]3.6e-4695.37Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKL+SEAPKFKLITP+I+SDRLRINGSLARRAI+DLMARGSIRLISAHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

XP_008442240.1 PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo]4.2e-4798.15Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKLITPSILSDRLRINGSLARRAI+DLMARGSIRLISAHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

XP_022142384.1 40S ribosomal protein S25-2 [Momordica charantia]2.1e-4696.3Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQG+YDKLLSEAPK+KLITPSILSDRLRINGSLARRAI+DLMARGSIRLISAHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

XP_042496780.1 40S ribosomal protein S25-2 [Macadamia integrifolia]2.1e-4696.3Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPK+KLITPSILSDRLRINGSLARRAIRDLMARG IR++SAHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

TrEMBL top hitse value%identityAlignment
A0A0A0KYW1 40S ribosomal protein S251.7e-4695.37Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKL+SEAPKFKLITP+I+SDRLRINGSLARRAI+DLMARGSIRLISAHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

A0A1S3B608 40S ribosomal protein S252.1e-4798.15Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKLITPSILSDRLRINGSLARRAI+DLMARGSIRLISAHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

A0A2N9J628 40S ribosomal protein S256.0e-4796.3Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIR++S HSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

A0A6J1CLE7 40S ribosomal protein S251.0e-4696.3Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQG+YDKLLSEAPK+KLITPSILSDRLRINGSLARRAI+DLMARGSIRLISAHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

I3TAL6 40S ribosomal protein S251.7e-4694.44Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLLSEAPKFKLITPSILSDRLR+NGSLARRAIR+LMARGSIR++SAH+SQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

SwissProt top hitse value%identityAlignment
P46301 40S ribosomal protein S251.1e-4588.89Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ +YDKLLSEAPK+KLITPS+LSDRLRI+GSLAR+AIRDLMARGSIR++SAH+SQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

Q8GYL5 40S ribosomal protein S25-31.3e-4691.59Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLLSEAPKFKLITPSILSDRLRINGSLARRAIR+LMA+G+IR++SAHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATN
        IYTRAT+
Subjt:  IYTRATN

Q9SIK2 40S ribosomal protein S25-22.0e-4791.67Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLL+EAPKFKLITPSILSDR+RINGSLARRAIR+LMA+G IR++SAHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

Q9SIW5 40S ribosomal protein S25-12.0e-4488.68Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKL+SEAPKFKLITPSILSDRLRINGSLAR+AIRDLM +G+IR++S HSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRAT
        I TRAT
Subjt:  IYTRAT

Q9T029 40S ribosomal protein S25-42.2e-4689.81Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKLITPSILSDR+RINGSLARRAIR+LMA+G IR+++AHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

Arabidopsis top hitse value%identityAlignment
AT2G21580.1 Ribosomal protein S25 family protein1.4e-4891.67Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQG+YDKLL+EAPKFKLITPSILSDR+RINGSLARRAIR+LMA+G IR++SAHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

AT2G21580.2 Ribosomal protein S25 family protein7.7e-4790.74Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQG+YDKLL+EAPKFKLITPSILSDR+RINGSLARRAIR+LMA+G IR++SAHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

AT4G34555.1 Ribosomal protein S25 family protein9.1e-4891.59Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLLSEAPKFKLITPSILSDRLRINGSLARRAIR+LMA+G+IR++SAHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATN
        IYTRAT+
Subjt:  IYTRATN

AT4G39200.1 Ribosomal protein S25 family protein1.6e-4789.81Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKLITPSILSDR+RINGSLARRAIR+LMA+G IR+++AHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

AT4G39200.2 Ribosomal protein S25 family protein8.5e-4688.89Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ
        MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQ +YDKLL+EAPKFKLITPSILSDR+RINGSLARRAIR+LMA+G IR+++AHSSQQ
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCTAAGAAGGATAAGGCTCCTCCTCCGTCCTCCAAGCCCGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGT
GAACAACATGGTACTGTTTGATCAGGGATCCTATGACAAGCTTCTTTCAGAAGCTCCAAAATTCAAGCTTATTACTCCTTCCATCCTTTCAGACAGATTAAGGATCAATG
GATCGTTGGCACGTCGGGCGATTAGGGATTTAATGGCGAGAGGTTCTATTAGGCTCATATCTGCTCATTCTAGCCAGCAGATATACACTAGAGCAACTAATACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACCTAAGAAGGATAAGGCTCCTCCTCCGTCCTCCAAGCCCGCTAAATCTGGTGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGT
GAACAACATGGTACTGTTTGATCAGGGATCCTATGACAAGCTTCTTTCAGAAGCTCCAAAATTCAAGCTTATTACTCCTTCCATCCTTTCAGACAGATTAAGGATCAATG
GATCGTTGGCACGTCGGGCGATTAGGGATTTAATGGCGAGAGGTTCTATTAGGCTCATATCTGCTCATTCTAGCCAGCAGATATACACTAGAGCAACTAATACATGA
Protein sequenceShow/hide protein sequence
MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGSYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLISAHSSQQIYTRATNT