; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10017844 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017844
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S ribosomal protein L22-2
Genome locationChr03:24145722..24146051
RNA-Seq ExpressionHG10017844
SyntenyHG10017844
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002671 - Ribosomal protein L22e
IPR038526 - Ribosomal protein L22e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136027.1 60S ribosomal protein L22-2 [Cucumis sativus]1.8e-4595.33Show/hide
Query:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV
        MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL V
Subjt:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV

Query:  IASYKDR
        IAS KDR
Subjt:  IASYKDR

XP_022953729.1 60S ribosomal protein L22-2-like [Cucurbita moschata]4.4e-4493.46Show/hide
Query:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV
        MS GAAASG PKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGD+VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL V
Subjt:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV

Query:  IASYKDR
        IAS KDR
Subjt:  IASYKDR

XP_022960081.1 60S ribosomal protein L22-2-like [Cucurbita moschata]8.9e-4594.39Show/hide
Query:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV
        MS GAAASGGPKG KKG TFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL V
Subjt:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV

Query:  IASYKDR
        IAS KDR
Subjt:  IASYKDR

XP_022991268.1 60S ribosomal protein L22-2-like [Cucurbita maxima]4.0e-4594.39Show/hide
Query:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV
        MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGD+VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL V
Subjt:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV

Query:  IASYKDR
        IAS KDR
Subjt:  IASYKDR

XP_023548993.1 60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo]4.0e-4594.39Show/hide
Query:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV
        MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGD+VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL V
Subjt:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV

Query:  IASYKDR
        IAS KDR
Subjt:  IASYKDR

TrEMBL top hitse value%identityAlignment
A0A0A0K637 Uncharacterized protein8.7e-4695.33Show/hide
Query:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV
        MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL V
Subjt:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV

Query:  IASYKDR
        IAS KDR
Subjt:  IASYKDR

A0A1S3BRQ9 60S ribosomal protein L22-28.7e-4695.33Show/hide
Query:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV
        MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL V
Subjt:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV

Query:  IASYKDR
        IAS KDR
Subjt:  IASYKDR

A0A5D3D2W6 60S ribosomal protein L22-2-like8.7e-4695.33Show/hide
Query:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV
        MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL V
Subjt:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV

Query:  IASYKDR
        IAS KDR
Subjt:  IASYKDR

A0A6J1DLK6 60S ribosomal protein L22-28.7e-4695.33Show/hide
Query:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV
        MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL V
Subjt:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV

Query:  IASYKDR
        IAS KDR
Subjt:  IASYKDR

A0A6J1JVR1 60S ribosomal protein L22-2-like1.9e-4594.39Show/hide
Query:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV
        MS GAAASGGPKG KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGK GALGD+VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWL V
Subjt:  MSCGAAASGGPKG-KKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWV

Query:  IASYKDR
        IAS KDR
Subjt:  IASYKDR

SwissProt top hitse value%identityAlignment
P47198 60S ribosomal protein L222.5e-2660.58Show/hide
Query:  ASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDS-VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKD
        A GG K K+ + F +DC  PVED IMD A+ E+FL ERIKV GK G LG   VT+ R K+KITV S+  FSKRYLKYLTKKYLKK+N+RDWL V+A+ K+
Subjt:  ASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDS-VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKD

Query:  RKRL
           L
Subjt:  RKRL

Q98TF8 60S ribosomal protein L221.9e-2660.95Show/hide
Query:  AASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDS-VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYK
        AA GG K K+ + F +DC  PVED IMD A+ E+FL ERIKV GK G LG   VT+ R K+KITV S+  FSKRYLKYLTKKYLKK+N+RDWL V+A+ K
Subjt:  AASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDS-VTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYK

Query:  DRKRL
        +   L
Subjt:  DRKRL

Q9FE58 60S ribosomal protein L22-34.2e-3776.42Show/hide
Query:  MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVI
        MS G AA+   K KKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSV++TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWL VI
Subjt:  MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVI

Query:  ASYKDR
        A+ KDR
Subjt:  ASYKDR

Q9M9W1 60S ribosomal protein L22-21.9e-3777.36Show/hide
Query:  MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVI
        MS G AA    K KKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSVT+TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWL VI
Subjt:  MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVI

Query:  ASYKDR
        A+ KDR
Subjt:  ASYKDR

Q9SRX7 Putative 60S ribosomal protein L22-19.6e-3470.87Show/hide
Query:  GAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASY
        GA +SG    KKGV+FVIDC+KPV+D I++IA+LEKFL ERIKV GK GALG+SV++TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWL VIAS 
Subjt:  GAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASY

Query:  KDR
        KD+
Subjt:  KDR

Arabidopsis top hitse value%identityAlignment
AT1G02830.1 Ribosomal L22e protein family6.8e-3570.87Show/hide
Query:  GAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASY
        GA +SG    KKGV+FVIDC+KPV+D I++IA+LEKFL ERIKV GK GALG+SV++TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWL VIAS 
Subjt:  GAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASY

Query:  KDR
        KD+
Subjt:  KDR

AT3G05560.1 Ribosomal L22e protein family1.3e-3877.36Show/hide
Query:  MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVI
        MS G AA    K KKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSVT+TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWL VI
Subjt:  MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVI

Query:  ASYKDR
        A+ KDR
Subjt:  ASYKDR

AT3G05560.2 Ribosomal L22e protein family1.3e-3877.36Show/hide
Query:  MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVI
        MS G AA    K KKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSVT+TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWL VI
Subjt:  MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVI

Query:  ASYKDR
        A+ KDR
Subjt:  ASYKDR

AT3G05560.3 Ribosomal L22e protein family1.3e-3877.36Show/hide
Query:  MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVI
        MS G AA    K KKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSVT+TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWL VI
Subjt:  MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVI

Query:  ASYKDR
        A+ KDR
Subjt:  ASYKDR

AT5G27770.1 Ribosomal L22e protein family3.0e-3876.42Show/hide
Query:  MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVI
        MS G AA+   K KKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGK GALGDSV++TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWL VI
Subjt:  MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVI

Query:  ASYKDR
        A+ KDR
Subjt:  ASYKDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTGTGGAGCAGCCGCATCCGGTGGCCCGAAGGGGAAGAAGGGTGTGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATTGCCTCGTT
GGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGTAAAGTTGGGGCACTTGGTGACTCGGTTACTGTCACTCGGGACAAGAACAAGATCACCGTCAACTCCGATAGCA
ATTTCTCCAAGAGGTATCTCAAATACTTGACTAAGAAGTATTTGAAGAAACACAACGTTAGAGATTGGCTCTGGGTTATTGCTTCGTACAAGGACCGCAAACGTCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTGTGGAGCAGCCGCATCCGGTGGCCCGAAGGGGAAGAAGGGTGTGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATTGCCTCGTT
GGAGAAGTTTCTTCTCGAGAGGATCAAGGTCGGCGGTAAAGTTGGGGCACTTGGTGACTCGGTTACTGTCACTCGGGACAAGAACAAGATCACCGTCAACTCCGATAGCA
ATTTCTCCAAGAGGTATCTCAAATACTTGACTAAGAAGTATTTGAAGAAACACAACGTTAGAGATTGGCTCTGGGTTATTGCTTCGTACAAGGACCGCAAACGTCTATGA
Protein sequenceShow/hide protein sequence
MSCGAAASGGPKGKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKVGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLWVIASYKDRKRL