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HG10017903 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017903
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr03:25761782..25762141
RNA-Seq ExpressionHG10017903
SyntenyHG10017903
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5803680.1 putative transcription factor interactor and regulator CCHC(Zn) family [Helianthus annuus]1.9e-1142.22Show/hide
Query:  FDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTV
        +DG S+Y WNI+G ++  I+ +  EM+MAANAY++N  +  Q + +I++GF+G LK WWD CL+ + +     H  +  KK  IK EN V
Subjt:  FDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTV

KAG2708372.1 hypothetical protein I3760_05G189500 [Carya illinoinensis]1.4e-1136.7Show/hide
Query:  KYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTVTMG
        ++I  + F  D++Y WNIDG+S++ I+  F EM+M AN Y+++  S+HQ   +++ GF+G LK WWD+ L+ + R  I +        + IK E      
Subjt:  KYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTVTMG

Query:  KDGKPIDGA
         DG+PI+ A
Subjt:  KDGKPIDGA

KAG6656908.1 hypothetical protein CIPAW_04G053800 [Carya illinoinensis]1.4e-1136.7Show/hide
Query:  KYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTVTMG
        ++I  + F  D++Y WNIDG+S++ I+  F EM+M AN Y+++  S+HQ   +++ GF+G LK WWD+ L+ + R  I +        + IK E      
Subjt:  KYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTVTMG

Query:  KDGKPIDGA
         DG+PI+ A
Subjt:  KDGKPIDGA

XP_023520850.1 uncharacterized protein LOC111784362 [Cucurbita pepo subsp. pepo]1.7e-1245.65Show/hide
Query:  FDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYE-SNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTVT
        +DG +IY WNIDG+SD+LI+ V NEM+MAA AY+   H S+HQ  ++++ GF+G LK WWD  L    R+ I  H       + IK E   T
Subjt:  FDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYE-SNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTVT

XP_033139453.1 uncharacterized protein LOC117131412 isoform X1 [Brassica rapa]5.4e-1137.96Show/hide
Query:  YEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTH------KTEVNKKR
        +E+ +KY     + G+SIY WNIDG S++ ++ +F EM+MA  AY+    ++ Q+  L+++GF+GAL+ WWDN L    +ESI  H      + E     
Subjt:  YEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTH------KTEVNKKR

Query:  TIKVENTV
         I+V+N V
Subjt:  TIKVENTV

TrEMBL top hitse value%identityAlignment
A0A1J3J6U2 Movement protein (Fragment)3.4e-1143.02Show/hide
Query:  YEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTH
        +E+ +KY  N ++ G+ IY WNIDG S++ I+++  EM MAA A+++   ++ QA  +I+ GF+GAL+ WWDN LS   ++SI  H
Subjt:  YEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTH

A0A251VET5 Putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidase domain protein1.7e-1041.11Show/hide
Query:  FDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTV
        +DG S+Y WNI+G ++  I+ +  EM+MAANAY++N  +  Q + +I++GF+G LK WWD  L+ + +     H  +  KK  IK EN V
Subjt:  FDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTV

A0A6J1EZI3 uncharacterized protein LOC1114406585.8e-1145.35Show/hide
Query:  YVWNIDGMSDFLIVEVFNEMLMAANAYE-SNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTVT
        Y WNIDG+SD+LI+ V NEM+MAA AY+   H S+HQ  ++++ GF+G LK WWD  L    R+ I  H       + IK E   T
Subjt:  YVWNIDGMSDFLIVEVFNEMLMAANAYE-SNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTVT

A5ATW3 Uncharacterized protein9.9e-1135.42Show/hide
Query:  YEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTI
        YE+ ++ +++  +DGD IY WNIDG+SD  ++ +  EM+MA+  Y+    S+H     ++ GF+G LK WWDN L+ +    I+T   E   + ++
Subjt:  YEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTI

V4KS84 Uncharacterized protein (Fragment)2.2e-1039.56Show/hide
Query:  YEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNH-LSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEV
        +E+ +KY  N ++ G+ IY WNIDG S++ I+ V  EM MA  A++++  +++ +A  L++ GFSG+LK WWDN L    + SI  H  ++
Subjt:  YEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNH-LSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATACGAACAAATAAATAAGTATATTAGAAATACTATATTTGATGGTGATTCCATCTACGTCTGGAATATAGATGGAATGTCGGACTTCTTAATTGTTGAAGTCTT
TAATGAAATGCTTATGGCAGCCAATGCCTATGAATCAAATCATCTTTCAAATCATCAAGCAATAAAATTAATTCTCAATGGCTTTAGTGGTGCACTAAAAATGTGGTGGG
ACAATTGTCTTAGCCCCAAAGCTAGAGAAAGTATAAAAACTCATAAGACGGAGGTAAATAAGAAAAGAACAATTAAAGTTGAAAATACAGTAACAATGGGAAAAGATGGA
AAACCCATCGACGGAGCTTCTACCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGATACGAACAAATAAATAAGTATATTAGAAATACTATATTTGATGGTGATTCCATCTACGTCTGGAATATAGATGGAATGTCGGACTTCTTAATTGTTGAAGTCTT
TAATGAAATGCTTATGGCAGCCAATGCCTATGAATCAAATCATCTTTCAAATCATCAAGCAATAAAATTAATTCTCAATGGCTTTAGTGGTGCACTAAAAATGTGGTGGG
ACAATTGTCTTAGCCCCAAAGCTAGAGAAAGTATAAAAACTCATAAGACGGAGGTAAATAAGAAAAGAACAATTAAAGTTGAAAATACAGTAACAATGGGAAAAGATGGA
AAACCCATCGACGGAGCTTCTACCTCTTAA
Protein sequenceShow/hide protein sequence
MGYEQINKYIRNTIFDGDSIYVWNIDGMSDFLIVEVFNEMLMAANAYESNHLSNHQAIKLILNGFSGALKMWWDNCLSPKARESIKTHKTEVNKKRTIKVENTVTMGKDG
KPIDGASTS