; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10017929 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017929
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase I subunit RPA1-like
Genome locationChr03:26190055..26193604
RNA-Seq ExpressionHG10017929
SyntenyHG10017929
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038287.1 DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa]3.3e-1354.55Show/hide
Query:  ILPINFFKKASYSEKKSVYLQDFPLELVYWAFETMPKLSDIDVGFGRRIGNQIPRIRTWKCLEVDE
        IL   F KKASY++K  VYLQ FPL LVYWA E +P+ S++DVGFGR++  + P I TW+CL+  +
Subjt:  ILPINFFKKASYSEKKSVYLQDFPLELVYWAFETMPKLSDIDVGFGRRIGNQIPRIRTWKCLEVDE
XP_038891747.1 pescadillo homolog [Benincasa hispida]2.2e-0947.69Show/hide
Query:  LPINFFKKASYSEKKSVYLQDFPLELVYWAFETMPKLSDIDVGFGRRIGNQIPRIRTWKCLEVDE
        L I FFKK   ++  S++LQ FPL LVYWAFE +P+LS+  +GF RRI +  PR+  W+  E ++
Subjt:  LPINFFKKASYSEKKSVYLQDFPLELVYWAFETMPKLSDIDVGFGRRIGNQIPRIRTWKCLEVDE
TrEMBL top hitse value%identityAlignment
A0A5A7T9I0 DNA-directed RNA polymerase I subunit RPA1-like1.6e-1354.55Show/hide
Query:  ILPINFFKKASYSEKKSVYLQDFPLELVYWAFETMPKLSDIDVGFGRRIGNQIPRIRTWKCLEVDE
        IL   F KKASY++K  VYLQ FPL LVYWA E +P+ S++DVGFGR++  + P I TW+CL+  +
Subjt:  ILPINFFKKASYSEKKSVYLQDFPLELVYWAFETMPKLSDIDVGFGRRIGNQIPRIRTWKCLEVDE
A0A5D3B9P7 Uncharacterized protein8.8e-0442.37Show/hide
Query:  LPINFFKKASYSEKKSVYLQDFPLELVYWAFETMPKLSDIDVGFGRRIGNQIPRIRTWK
        L + + +KA+     +  LQ FP  LV WA E +PKLS+   G   RIG++ PRI  WK
Subjt:  LPINFFKKASYSEKKSVYLQDFPLELVYWAFETMPKLSDIDVGFGRRIGNQIPRIRTWK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAAGAAAAAGGAAAAGAACATCAATCAAAGAGGACTCATCAAGCAGGTAAAAAACATTAAAACTGAAATGACAAATAAGGATAAAGGGAAAGAAAAGACAATGAA
GAACTATTTAGAGAGTATCCTTGGGGAAGATTGTCTTACAATCTTACCTATCAATTTTTTTAAGAAGGCATCTTATAGTGAGAAGAAGTCTGTCTACCTTCAAGATTTCC
CGTTAGAACTAGTATATTGGGCTTTTGAGACAATGCCTAAACTGTCAGACATAGATGTTGGATTTGGAAGAAGAATAGGTAACCAAATTCCAAGAATCAGAACATGGAAG
TGCTTGGAGGTAGATGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAAGAAAAAGGAAAAGAACATCAATCAAAGAGGACTCATCAAGCAGGTAAAAAACATTAAAACTGAAATGACAAATAAGGATAAAGGGAAAGAAAAGACAATGAA
GAACTATTTAGAGAGTATCCTTGGGGAAGATTGTCTTACAATCTTACCTATCAATTTTTTTAAGAAGGCATCTTATAGTGAGAAGAAGTCTGTCTACCTTCAAGATTTCC
CGTTAGAACTAGTATATTGGGCTTTTGAGACAATGCCTAAACTGTCAGACATAGATGTTGGATTTGGAAGAAGAATAGGTAACCAAATTCCAAGAATCAGAACATGGAAG
TGCTTGGAGGTAGATGAATGA
Protein sequenceShow/hide protein sequence
MVKKKEKNINQRGLIKQVKNIKTEMTNKDKGKEKTMKNYLESILGEDCLTILPINFFKKASYSEKKSVYLQDFPLELVYWAFETMPKLSDIDVGFGRRIGNQIPRIRTWK
CLEVDE