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HG10017947 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017947
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionChitinase 1
Genome locationChr03:26608261..26608512
RNA-Seq ExpressionHG10017947
SyntenyHG10017947
Gene Ontology termsGO:0000272 - polysaccharide catabolic process (biological process)
GO:0006032 - chitin catabolic process (biological process)
GO:0016998 - cell wall macromolecule catabolic process (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0004568 - chitinase activity (molecular function)
GO:0008061 - chitin binding (molecular function)
InterPro domainsIPR000726 - Glycoside hydrolase, family 19, catalytic
IPR023346 - Lysozyme-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA55883.1 chitinase [Beta vulgaris subsp. vulgaris]3.3e-0757.78Show/hide
Query:  HGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSL
        HG + R   RI+FY+RYCD+ +D+ YG+NL+CY QTPF+WG+K L
Subjt:  HGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSL

XP_010666842.1 PREDICTED: endochitinase [Beta vulgaris subsp. vulgaris]3.3e-0757.78Show/hide
Query:  HGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSL
        HG + R   RI+FY+RYCD+ +D+ YG+NL+CY QTPF+WG+K L
Subjt:  HGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSL

XP_010672242.1 PREDICTED: endochitinase [Beta vulgaris subsp. vulgaris]1.8e-0545.61Show/hide
Query:  LAIALSSTSSMVNMNVHGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWG
        L + ++  +  +  N+   + RV  RI FYKRYCD+ + + YGENL+CY Q PFNWG
Subjt:  LAIALSSTSSMVNMNVHGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWG

XP_021774913.1 endochitinase-like [Chenopodium quinoa]1.8e-0548.15Show/hide
Query:  TSSMVN----MNVHGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWG
        T++++N     N+   + RV  RI FYKRYCD+ +++ YG+NL+CY+Q PFNWG
Subjt:  TSSMVN----MNVHGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWG

XP_022132793.1 endochitinase-like [Momordica charantia]2.8e-0663.83Show/hide
Query:  GLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSLSQM
        G N  V +RIEFYKRYCD+ +DIEYGE+L+CY Q PFN  VK   QM
Subjt:  GLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSLSQM

TrEMBL top hitse value%identityAlignment
A0A0J8B464 Uncharacterized protein1.6e-0757.78Show/hide
Query:  HGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSL
        HG + R   RI+FY+RYCD+ +D+ YG+NL+CY QTPF+WG+K L
Subjt:  HGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSL

A0A6J1BXB7 endochitinase-like1.4e-0663.83Show/hide
Query:  GLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSLSQM
        G N  V +RIEFYKRYCD+ +DIEYGE+L+CY Q PFN  VK   QM
Subjt:  GLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSLSQM

A0A7J9GP17 Chitin-binding type-1 domain-containing protein1.1e-0546.3Show/hide
Query:  TSSMVNMNV---HGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGV
        T++++N  +   HG +YRV  RI+FY+RYCD+ + + YG +L+CY Q PF+WG+
Subjt:  TSSMVNMNV---HGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGV

A0A803M5X7 Uncharacterized protein8.8e-0648.15Show/hide
Query:  TSSMVN----MNVHGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWG
        T++++N     N+   + RV  RI FYKRYCD+ +++ YG+NL+CY+Q PFNWG
Subjt:  TSSMVN----MNVHGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWG

Q42421 Chitinase1.6e-0757.78Show/hide
Query:  HGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSL
        HG + R   RI+FY+RYCD+ +D+ YG+NL+CY QTPF+WG+K L
Subjt:  HGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSL

SwissProt top hitse value%identityAlignment
Q39799 Endochitinase 13.8e-0656.1Show/hide
Query:  GLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGV
        G N +V +RI FYKRYCD+ + + YG NL+CY Q+PF  GV
Subjt:  GLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGV

Q42993 Chitinase 15.8e-0761.54Show/hide
Query:  HGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFN
        HG + RV +RI FYKRYCDM + + YG NL+CY Q PFN
Subjt:  HGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFN

Q8GUD7 Probable inactive chitinase-like protein LaCIC (Fragment)2.9e-0660Show/hide
Query:  GLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWG
        G + RV +RI FYKRYCDM   + YG NL+CY QTPF  G
Subjt:  GLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWG

Q949H3 Inactive chitinase-like protein 13.8e-0660Show/hide
Query:  GLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWG
        G + RV +RI FYKRYCDM   + YG NL+CY QTPF  G
Subjt:  GLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWG

W0IWL0 Inactive chitinase-like protein 22.9e-0660Show/hide
Query:  GLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWG
        G + RV +RI FYKRYCDM   + YG NL+CY QTPF  G
Subjt:  GLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATCGTTGGTAAATGGCGTCCATCAAATTATGATATATATGCTGGAAGAGTTCCTGGCTATAGCCTTGTCATCAACATCATCAATGGTGAATATGAATGTG
CATGGTCTAAATTATAGAGTAAATGAGAGAATTGAATTCTATAAAAGGTATTGTGACATGACGATGGATATTGAGTATGGAGAGAACTTGAATTGTTACTATCAA
ACTCCTTTTAATTGGGGTGTGAAATCATTATCTCAGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTATCGTTGGTAAATGGCGTCCATCAAATTATGATATATATGCTGGAAGAGTTCCTGGCTATAGCCTTGTCATCAACATCATCAATGGTGAATATGAATGTG
CATGGTCTAAATTATAGAGTAAATGAGAGAATTGAATTCTATAAAAGGTATTGTGACATGACGATGGATATTGAGTATGGAGAGAACTTGAATTGTTACTATCAA
ACTCCTTTTAATTGGGGTGTGAAATCATTATCTCAGATGTAA
Protein sequenceShow/hide protein sequence
MLSLVNGVHQIMIYMLEEFLAIALSSTSSMVNMNVHGLNYRVNERIEFYKRYCDMTMDIEYGENLNCYYQTPFNWGVKSLSQM