CuGenDBv2

Gene ID	HG10017968
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	SWIB domain-containing protein
Genome location	Chr03:28278384..28280602
RNA-Seq Expression	HG10017968
Synteny	HG10017968
Gene Ontology terms	GO:0005634 - nucleus (cellular component)
InterPro domains	IPR003121 - SWIB/MDM2 domain IPR019835 - SWIB domain IPR036885 - SWIB/MDM2 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KGN55149.2 hypothetical protein Csa_012337 [Cucumis sativus]

5.7e-44

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Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKT NLQDPTNKNVVICDEKLKSILLGKPKV+L ELP LIKLHFPKN K
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

XP_008449303.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]

2.0e-44

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Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKT NLQDPTNKNVV+CDEKLKSILLGKPKV+L ELP LIKLHFPKNPK
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

XP_022928748.1 upstream activation factor subunit UAF30 [Cucurbita moschata]

1.7e-43

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Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKT NLQDPTNKNVVICDEKLKSILLGK K++L ELP LIKLHFPKNPK
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

XP_031739586.1 upstream activation factor subunit spp27 [Cucumis sativus]

5.7e-44

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Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKT NLQDPTNKNVVICDEKLKSILLGKPKV+L ELP LIKLHFPKN K
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

XP_038882021.1 upstream activation factor subunit spp27 [Benincasa hispida]

5.5e-47

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Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKT NLQDPTNKNVVICDEKLKSILLGKPKV+L ELP LIKLHFPKNPK
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2E1 SWIB domain-containing protein

2.8e-44

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Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKT NLQDPTNKNVVICDEKLKSILLGKPKV+L ELP LIKLHFPKN K
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

A0A151SBL4 Upstream activation factor subunit UAF30

1.1e-43

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Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        MLP+RMK AITDNPKKLANLIDL+NLPSTLREFVGQSQISRLGCFKCVWSYIKT NLQDP NKNVV CDEKLKSILLGKP+VDL ELP LIK+HFPK PK
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

A0A1S3BL41 upstream activation factor subunit spp27

9.5e-45

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Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKT NLQDPTNKNVV+CDEKLKSILLGKPKV+L ELP LIKLHFPKNPK
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

A0A6J1ELR1 upstream activation factor subunit UAF30

8.1e-44

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Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKT NLQDPTNKNVVICDEKLKSILLGK K++L ELP LIKLHFPKNPK
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

A0A6J1HY33 upstream activation factor subunit UAF30 isoform X2

1.4e-43

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Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKT NLQDPTNKNVVICDEKL+SILLGK KV+L ELP LIKLHFPKNPK
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

SwissProt top hits

e value

%identity

Alignment

O74503 Upstream activation factor subunit spp27

2.6e-07

46.15

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Query:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSI
        + L   L EF+G  Q+SR    K +W YIK  +LQDP +K  ++CD+KLKS+
Subjt:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSI

Q05024 Protein TRI1

3.8e-06

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Query:  RMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLH
        + K    D+P   +  +  V L + L++F+G  ++ R    K +W YIK  +LQ+P ++  ++CDEK++ I  GK K+ +  + +L+  H
Subjt:  RMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLH

Q08747 Upstream activation factor subunit UAF30

4.5e-07

33.77

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Query:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        V L  +L   +G+ +++R    + +W+YIK  NLQ+P NK  ++CDEKL+ ++LGK   ++ E+ +++  H  +  K
Subjt:  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

Arabidopsis top hits

e value

%identity

Alignment

AT1G31760.1 SWIB/MDM2 domain superfamily protein

5.6e-13

44.93

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Query:  LREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKN
        L  F G+ +++R    K VW Y+K  NLQ+P NK  + CD+KLK+I  GK KV + E+ +L+  HFPK+
Subjt:  LREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKN

AT2G35605.1 SWIB/MDM2 domain superfamily protein

7.8e-15

40.51

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Query:  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKN
        ++ +V +   L  F+G++++SR    K +W YIK  NLQ+P NK  ++CDE+LK+I  GK  V  +E+ +L+  HFPK+
Subjt:  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKN

AT4G26810.1 SWIB/MDM2 domain superfamily protein

1.0e-43

81.9

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Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        MLP+R+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKT NLQDP NKNVVICDEKLKSILLGK +V+LV+LP LIKLHFPK  K
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

Query:  GESPK
          S K
Subjt:  GESPK

AT4G26810.2 SWIB/MDM2 domain superfamily protein

1.0e-43

81.9

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Query:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK
        MLP+R+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKT NLQDP NKNVVICDEKLKSILLGK +V+LV+LP LIKLHFPK  K
Subjt:  MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPK

Query:  GESPK
          S K
Subjt:  GESPK

AT4G34290.1 SWIB/MDM2 domain superfamily protein

1.4e-11

45.45

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Query:  LREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHF
        +++ VG  +I R    K +W+YIK  +LQDP NK  ++CDEKLK I  GK +V  +E+ +LI  HF
Subjt:  LREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHF

Sequences

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CDS sequence

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ATGTTGCCAAAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTC
CCAAATTTCTCGTCTGGGCTGTTTCAAGTGTGTGTGGTCATATATCAAAACCAAAAATCTTCAGGATCCGACCAACAAGAATGTGGTAATTTGTGATGAGAAGTTAAAGA
GTATATTGCTAGGCAAGCCCAAGGTTGATCTAGTCGAACTTCCTGAACTGATTAAATTACATTTTCCCAAAAATCCCAAGGGCGAATCTCCCAAGTTCTGTTCTTGA

mRNA sequence

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Protein sequence

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MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTKNLQDPTNKNVVICDEKLKSILLGKPKVDLVELPELIKLHFPKNPKGESPKFCS

HG10017968 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome