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HG10017988 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10017988
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr03:28593956..28598020
RNA-Seq ExpressionHG10017988
SyntenyHG10017988
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4313794.1 unnamed protein product [Prunus armeniaca]3.4e-0834.04Show/hide
Query:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVNSS
        S  W PP  G LKLN++ AC       GLG +  N +G++++A  VP+  C   + +E L + +GL+F+ E  + SL +ET+ K ++  +++S+
Subjt:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVNSS

PQM35320.1 uncharacterized protein Pyn_06201 [Prunus yedoensis var. nudiflora]1.3e-1038.04Show/hide
Query:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVN
        S  W PPS+G LKLN++ AC       GLG +  N +G+++ A S P+  C   + +E L + +GL+F+ E G++SL +ETN K ++  +V+
Subjt:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVN

XP_008229542.1 PREDICTED: uncharacterized protein LOC103328904 [Prunus mume]1.3e-0734.04Show/hide
Query:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVNSS
        S  W PP  G LKLN++ AC       GLG +  N +G+++ A SVP+  C   + +E L +  GL+F+ E  + SL +ET+ K ++  +++ +
Subjt:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVNSS

XP_021807757.1 uncharacterized protein LOC110751579 [Prunus avium]4.0e-0935.11Show/hide
Query:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVNSS
        S  W PP  G LKLN++ AC       GLG +  N +G+++ A SVP+  C   + +E L + +GL+F+ E G+ SL +ET+ K ++  +++ +
Subjt:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVNSS

XP_024171844.1 uncharacterized protein LOC112177827 [Rosa chinensis]4.0e-0937.84Show/hide
Query:  SSRCGSSRLGSHL---SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVK
        + R G  R+G H+    Q W P S+GCLK+N + A        GLGV+F +  G++  A +VP +  +   A E+L LL GLRF+   GF+SL +E N  
Subjt:  SSRCGSSRLGSHL---SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVK

Query:  RSLELVVNSSG
          L  + + SG
Subjt:  RSLELVVNSSG

TrEMBL top hitse value%identityAlignment
A0A2P6PVQ5 Putative ribonuclease H-like domain-containing protein1.4e-0737.78Show/hide
Query:  WIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVNS
        W PPSV C+K+N + AC       GLGV+F +  GE+    +VP +  +   + EAL LL GLRF+   GF++L +E +    +  + NS
Subjt:  WIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVNS

A0A314UDF4 RNase H domain-containing protein6.1e-1138.04Show/hide
Query:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVN
        S  W PPS+G LKLN++ AC       GLG +  N +G+++ A S P+  C   + +E L + +GL+F+ E G++SL +ETN K ++  +V+
Subjt:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVN

A0A6J5XRX0 RNase H domain-containing protein1.7e-0834.04Show/hide
Query:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVNSS
        S  W PP  G LKLN++ AC       GLG +  N +G++++A  VP+  C   + +E L + +GL+F+ E  + SL +ET+ K ++  +++S+
Subjt:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVNSS

A0A6P5RZ31 uncharacterized protein LOC1107515792.0e-0935.11Show/hide
Query:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVNSS
        S  W PP  G LKLN++ AC       GLG +  N +G+++ A SVP+  C   + +E L + +GL+F+ E G+ SL +ET+ K ++  +++ +
Subjt:  SQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKRSLELVVNSS

M5VTB6 RNase H domain-containing protein8.2e-0831.86Show/hide
Query:  KGPVVMSSRCGSSRLGSHLSQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIET
        KG   +S+        S  S  W PP  G LKLN++ AC        LG +  N +G+++ A SVP+  C   +  E L + +GL+F+ E G+ SL +E 
Subjt:  KGPVVMSSRCGSSRLGSHLSQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIET

Query:  NVKRSLELVVNSS
        + K ++  +V+ +
Subjt:  NVKRSLELVVNSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGCCCTGTTGTCATGTCTTCTCGGTGTGGTAGTAGTCGTTTGGGTAGTCACTTGAGTCAGTCGTGGATTCCTCCGTCAGTGGGTTGTTTGAAATTAAAC
ATTAATGTTGCTTGCTGTCCGGACAAGATGGGAATGGGTCTAGGGGTAATCTTCCTAAATGAGAATGGTGAGGTGGTGGCTGCTCATAGTGTTCCTATGTTGAGT
TGTGTTGAGACTGAAGCGAGTGAAGCTTTGCCATTGCTCGATGGTCTTCGTTTTTCTAAGGAGCATGGGTTCATTTCGTTGTGGATCGAGACTAACGTCAAGAGG
TCACTGGAGTTGGTTGTCAATAGTAGTGGTTGTCGGAGTTGGTTGTCAATAGTGGTGGTTGTCGGAGTTGGTCGTCAAGAGTGGTCACTAAAATTGGCTATTGGA
GGTGGTCAACGGAGTTGGAAGTCAGAGTTGATAGTTGGAGGTGGTAACCCCACTCCAAACATTCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGCCCTGTTGTCATGTCTTCTCGGTGTGGTAGTAGTCGTTTGGGTAGTCACTTGAGTCAGTCGTGGATTCCTCCGTCAGTGGGTTGTTTGAAATTAAAC
ATTAATGTTGCTTGCTGTCCGGACAAGATGGGAATGGGTCTAGGGGTAATCTTCCTAAATGAGAATGGTGAGGTGGTGGCTGCTCATAGTGTTCCTATGTTGAGT
TGTGTTGAGACTGAAGCGAGTGAAGCTTTGCCATTGCTCGATGGTCTTCGTTTTTCTAAGGAGCATGGGTTCATTTCGTTGTGGATCGAGACTAACGTCAAGAGG
TCACTGGAGTTGGTTGTCAATAGTAGTGGTTGTCGGAGTTGGTTGTCAATAGTGGTGGTTGTCGGAGTTGGTCGTCAAGAGTGGTCACTAAAATTGGCTATTGGA
GGTGGTCAACGGAGTTGGAAGTCAGAGTTGATAGTTGGAGGTGGTAACCCCACTCCAAACATTCCATAG
Protein sequenceShow/hide protein sequence
MKGPVVMSSRCGSSRLGSHLSQSWIPPSVGCLKLNINVACCPDKMGMGLGVIFLNENGEVVAAHSVPMLSCVETEASEALPLLDGLRFSKEHGFISLWIETNVKR
SLELVVNSSGCRSWLSIVVVVGVGRQEWSLKLAIGGGQRSWKSELIVGGGNPTPNIP