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HG10018110 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018110
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr04:494921..495961
RNA-Seq ExpressionHG10018110
SyntenyHG10018110
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS74992.1 Os01g0823550 [Oryza sativa Japonica Group]5.4e-1337.11Show/hide
Query:  VGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLEFEAWDLGLRRNLNEAEIIEWSLLSTLFVAPNDPMVDDKWRWKLDKSGQFTTE
        +G+G+   FW+D W+GD+PLKI +P ++++      +++Q W+   + W + LRR+L   E++EW  L       +     D+ RWKL KSGQFTT+
Subjt:  VGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLEFEAWDLGLRRNLNEAEIIEWSLLSTLFVAPNDPMVDDKWRWKLDKSGQFTTE

KAA0037030.1 hypothetical protein E6C27_scaffold86G001220 [Cucumis melo var. makuwa]1.1e-1848.11Show/hide
Query:  LGPHHNSNYPYMVALN-----LNNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLEFEAWDLGLRRNLNEAEIIEWSLLSTLF
        + PH N     + +L      L N  HV+ NG S SFWND WV     K A+P+ FAL  QKE SIA+CWN+++EAWDLGLR NLN+ E+ EWS+ S  F
Subjt:  LGPHHNSNYPYMVALN-----LNNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLEFEAWDLGLRRNLNEAEIIEWSLLSTLF

Query:  VAPNDP
             P
Subjt:  VAPNDP

KAE8690072.1 hypothetical protein F3Y22_tig00110927pilonHSYRG00013 [Hibiscus syriacus]7.0e-1334.96Show/hide
Query:  PYMVALNLNNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLEFEA--WDLGLRRNLNEAEIIEW-SLLSTLFVAPNDPMVDDK
        P +  LN   +   +GNG ++ FW+DSW+G  PLK+ +PR+F LS  K   +A+          WD+ LRRNL + E+ +W  L+S L       + DD 
Subjt:  PYMVALNLNNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLEFEA--WDLGLRRNLNEAEIIEW-SLLSTLFVAPNDPMVDDK

Query:  WRWKLDKSGQFTTEVSHPTSCIQ
        W W  +  G F+T+     SC++
Subjt:  WRWKLDKSGQFTTEVSHPTSCIQ

MCH99327.1 ribonuclease H protein [Trifolium medium]6.8e-1642.57Show/hide
Query:  VGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLE-FEAWDLGLRRNLNEAEIIEWSLLSTLFVAPNDPMVDDKWRWKLDKSGQFTTEVS
        +GNG   SFW D WVGD+ LK  +PRLF++S QK+ S+A  WN +  E W+L  RR L   E   W  L  +  +      +DKW WKLDK+G F+ + +
Subjt:  VGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLE-FEAWDLGLRRNLNEAEIIEWSLLSTLFVAPNDPMVDDKWRWKLDKSGQFTTEVS

Query:  H
        +
Subjt:  H

XP_021299953.1 uncharacterized protein LOC110428443 [Herrania umbratica]1.4e-1339.62Show/hide
Query:  NNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQC--WNLEFEAWDLGLRRNLNEAEIIEWSLLSTLFV-APNDPMVDDKWRWKLDKS
        +NI  VVGNG +I FW D W+G   L   +PR+FAL+N K   IA+   W      WD+ LRRNL + E+ +W  L TL +       + D   WK + +
Subjt:  NNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQC--WNLEFEAWDLGLRRNLNEAEIIEWSLLSTLFV-APNDPMVDDKWRWKLDKS

Query:  GQFTTE
        G +TT+
Subjt:  GQFTTE

TrEMBL top hitse value%identityAlignment
A0A0P0V9Y5 Os01g0823550 protein2.6e-1337.11Show/hide
Query:  VGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLEFEAWDLGLRRNLNEAEIIEWSLLSTLFVAPNDPMVDDKWRWKLDKSGQFTTE
        +G+G+   FW+D W+GD+PLKI +P ++++      +++Q W+   + W + LRR+L   E++EW  L       +     D+ RWKL KSGQFTT+
Subjt:  VGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLEFEAWDLGLRRNLNEAEIIEWSLLSTLFVAPNDPMVDDKWRWKLDKSGQFTTE

A0A392NHI5 Ribonuclease H protein (Fragment)3.3e-1642.57Show/hide
Query:  VGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLE-FEAWDLGLRRNLNEAEIIEWSLLSTLFVAPNDPMVDDKWRWKLDKSGQFTTEVS
        +GNG   SFW D WVGD+ LK  +PRLF++S QK+ S+A  WN +  E W+L  RR L   E   W  L  +  +      +DKW WKLDK+G F+ + +
Subjt:  VGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLE-FEAWDLGLRRNLNEAEIIEWSLLSTLFVAPNDPMVDDKWRWKLDKSGQFTTEVS

Query:  H
        +
Subjt:  H

A0A5D3C5L4 Uncharacterized protein5.4e-1948.11Show/hide
Query:  LGPHHNSNYPYMVALN-----LNNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLEFEAWDLGLRRNLNEAEIIEWSLLSTLF
        + PH N     + +L      L N  HV+ NG S SFWND WV     K A+P+ FAL  QKE SIA+CWN+++EAWDLGLR NLN+ E+ EWS+ S  F
Subjt:  LGPHHNSNYPYMVALN-----LNNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLEFEAWDLGLRRNLNEAEIIEWSLLSTLF

Query:  VAPNDP
             P
Subjt:  VAPNDP

A0A6A2ZG37 Uncharacterized protein3.4e-1334.96Show/hide
Query:  PYMVALNLNNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLEFEA--WDLGLRRNLNEAEIIEW-SLLSTLFVAPNDPMVDDK
        P +  LN   +   +GNG ++ FW+DSW+G  PLK+ +PR+F LS  K   +A+          WD+ LRRNL + E+ +W  L+S L       + DD 
Subjt:  PYMVALNLNNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQCWNLEFEA--WDLGLRRNLNEAEIIEW-SLLSTLFVAPNDPMVDDK

Query:  WRWKLDKSGQFTTEVSHPTSCIQ
        W W  +  G F+T+     SC++
Subjt:  WRWKLDKSGQFTTEVSHPTSCIQ

A0A6J1BLJ0 uncharacterized protein LOC1104284436.8e-1439.62Show/hide
Query:  NNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQC--WNLEFEAWDLGLRRNLNEAEIIEWSLLSTLFV-APNDPMVDDKWRWKLDKS
        +NI  VVGNG +I FW D W+G   L   +PR+FAL+N K   IA+   W      WD+ LRRNL + E+ +W  L TL +       + D   WK + +
Subjt:  NNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLFALSNQKEASIAQC--WNLEFEAWDLGLRRNLNEAEIIEWSLLSTLFV-APNDPMVDDKWRWKLDKS

Query:  GQFTTE
        G +TT+
Subjt:  GQFTTE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGACCTTCGCATCAACAATACAAAATCTGAGTTGAGAACTCAGATAGTGGAACTGTTAATTCATTGGCTGCATCCTATGACTGCAAGGTGGGCTCTTGGTCCTCA
TCATAACTCGATGACTGCAAGGTGGGCTCTTGGCCCTCATCATAACTCGATGACTGCAAGGTGGGCTCTTGGCCCTCATCATAACTCGAACTACCCTTATATGGTTGCTC
TCAACCTTAATAATATTGCCCATGTTGTCGGCAATGGTGCGTCCATCTCCTTTTGGAATGACAGTTGGGTTGGTGACTCCCCCCTCAAAATTGCCTATCCTAGATTATTT
GCACTCTCAAACCAAAAGGAAGCTTCCATTGCACAATGCTGGAACTTGGAATTTGAAGCATGGGACCTTGGGTTGCGGCGAAATCTTAATGAAGCAGAGATTATTGAATG
GTCTCTCCTCTCCACCCTTTTTGTTGCCCCTAATGACCCCATGGTGGATGACAAATGGAGATGGAAACTGGATAAATCTGGCCAATTTACCACGGAAGTCTCTCATCCAA
CTTCTTGCATCCAATGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGACCTTCGCATCAACAATACAAAATCTGAGTTGAGAACTCAGATAGTGGAACTGTTAATTCATTGGCTGCATCCTATGACTGCAAGGTGGGCTCTTGGTCCTCA
TCATAACTCGATGACTGCAAGGTGGGCTCTTGGCCCTCATCATAACTCGATGACTGCAAGGTGGGCTCTTGGCCCTCATCATAACTCGAACTACCCTTATATGGTTGCTC
TCAACCTTAATAATATTGCCCATGTTGTCGGCAATGGTGCGTCCATCTCCTTTTGGAATGACAGTTGGGTTGGTGACTCCCCCCTCAAAATTGCCTATCCTAGATTATTT
GCACTCTCAAACCAAAAGGAAGCTTCCATTGCACAATGCTGGAACTTGGAATTTGAAGCATGGGACCTTGGGTTGCGGCGAAATCTTAATGAAGCAGAGATTATTGAATG
GTCTCTCCTCTCCACCCTTTTTGTTGCCCCTAATGACCCCATGGTGGATGACAAATGGAGATGGAAACTGGATAAATCTGGCCAATTTACCACGGAAGTCTCTCATCCAA
CTTCTTGCATCCAATGGTAA
Protein sequenceShow/hide protein sequence
MSDLRINNTKSELRTQIVELLIHWLHPMTARWALGPHHNSMTARWALGPHHNSMTARWALGPHHNSNYPYMVALNLNNIAHVVGNGASISFWNDSWVGDSPLKIAYPRLF
ALSNQKEASIAQCWNLEFEAWDLGLRRNLNEAEIIEWSLLSTLFVAPNDPMVDDKWRWKLDKSGQFTTEVSHPTSCIQW