CuGenDBv2

Gene ID	HG10018148
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	CBS domain-containing protein CBSX1, chloroplastic-like
Genome location	Chr04:893048..896501
RNA-Seq Expression	HG10018148
Synteny	HG10018148
Gene Ontology terms	GO:0045454 - cell redox homeostasis (biological process) GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR000644 - CBS domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004139474.1 CBS domain-containing protein CBSX1, chloroplastic [Cucumis sativus]

3.7e-81

87.5

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Query:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALE
        MESIGCSLSSLSLA FR KSFSVQE+LFG  R    PI+HASVAQ FPELRKSTS+AASGTLMANSVPS +GVYIVGDFMTRKEELHVVKPTTSVDEALE
Subjt:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALE

Query:  ILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        ILVEKRITGFP        VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQ+LLSKTNGKVVGDLMT APLVVREITDLEDVAR
Subjt:  ILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

XP_008461810.1 PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis melo]

5.3e-80

86.98

Show/hide

Query:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALE
        MESI CSLSSLSLA  R KSFSVQE+LFG  R L  PI+HASVAQ FPELRKSTSLAASGTLMANSVPS +GVY VGDFMTRKEELHVVKPTTSVDEALE
Subjt:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALE

Query:  ILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        ILVEKRITGFP        VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQ+LLSKTNGKVVGDLMT APLVVREITDLEDVAR
Subjt:  ILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

XP_022986137.1 CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita maxima]

3.8e-78

81.82

Show/hide

Query:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQI------FPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTS
        MESIGCS +SLSLAQFR  SFS+QELLFG RR  PSPIVHASV+Q       FPE RKSTSL+ASGTLMANS PSRSGVY VGDFMTR+EELHVVKPTTS
Subjt:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQI------FPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTS

Query:  VDEALEILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        VDEALEILVEKRITGFP        VGVVSDYDLLALDSISGGGRTD SMFPEV+SSWKTFNEVQ+LLSKTNGKV+GDLMTPAPLVVRE T+LED AR
Subjt:  VDEALEILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

XP_023512672.1 CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita pepo subsp. pepo]

5.0e-78

81.82

Show/hide

Query:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQI------FPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTS
        MESIGCS +SLSL QFR  SFS+QELLFG RR  PSPIVHASV+Q       FPE RKSTSL+ASGTLMANS PSRSGVY VGDFMTR+EELHVVKPTTS
Subjt:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQI------FPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTS

Query:  VDEALEILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        VDEALEILVEKRITGFP        VGVVSDYDLLALDSISGGGRTD SMFPEVDSSWKTFNEVQ+LLSKTNGKV+GDLMTPAPLVVRE T+LED AR
Subjt:  VDEALEILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

XP_038895655.1 CBS domain-containing protein CBSX1, chloroplastic-like [Benincasa hispida]

4.7e-84

89.58

Show/hide

Query:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALE
        MESIGCSLSSLSLAQFR KSFSVQELLFG  R  PSPI+HASVAQ FPELR+STSLAA+GTLMANSVPSRSGVY VGDFMTRKEELHVVKPTTSVDEALE
Subjt:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALE

Query:  ILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        ILVEKRITGFP        VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQ+LLSKTNGKVVGDLMT APLVVREITDLEDVAR
Subjt:  ILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LSY7 Uncharacterized protein

1.8e-81

87.5

Show/hide

Query:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALE
        MESIGCSLSSLSLA FR KSFSVQE+LFG  R    PI+HASVAQ FPELRKSTS+AASGTLMANSVPS +GVYIVGDFMTRKEELHVVKPTTSVDEALE
Subjt:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALE

Query:  ILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        ILVEKRITGFP        VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQ+LLSKTNGKVVGDLMT APLVVREITDLEDVAR
Subjt:  ILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

A0A1S3CFF0 CBS domain-containing protein CBSX1, chloroplastic-like

2.6e-80

86.98

Show/hide

Query:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALE
        MESI CSLSSLSLA  R KSFSVQE+LFG  R L  PI+HASVAQ FPELRKSTSLAASGTLMANSVPS +GVY VGDFMTRKEELHVVKPTTSVDEALE
Subjt:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALE

Query:  ILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        ILVEKRITGFP        VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQ+LLSKTNGKVVGDLMT APLVVREITDLEDVAR
Subjt:  ILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

A0A5A7TCS5 CBS domain-containing protein CBSX1

2.7e-77

70.56

Show/hide

Query:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASG--------TLMANSV-----------------PSRSGVYI
        MESI CSLSSLSLA  R KSFSVQE+LFG  R L  PI+HASVAQ FPELRKSTSLAASG        +  ++SV                  S +GVY 
Subjt:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASG--------TLMANSV-----------------PSRSGVYI

Query:  VGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMT
        VGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFP        VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQ+LLSKTNGKVVGDLMT
Subjt:  VGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMT

Query:  PAPLVVREITDLEDVARFKNAFLHRFRNISFLPLRLNFEACSFLFCQM
         APLVVREITDLEDVAR+KN FL  F  ISFL L L  + CS   C++
Subjt:  PAPLVVREITDLEDVARFKNAFLHRFRNISFLPLRLNFEACSFLFCQM

A0A6J1EIL9 CBS domain-containing protein CBSX1, chloroplastic-like

1.9e-75

79.8

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Query:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQI------FPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTS
        MESIGCS +SLSL QFR  SFS+QELLFG RR   SPIVHASV+Q       FPE RKSTSL+ASGTLMA S PSRSGVY VGDFMTR+EELHVVKPTT 
Subjt:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQI------FPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTS

Query:  VDEALEILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        VDEALEILVEKRITGFP        VGVVSDYDLLALDSISGGGRTD SMFPEVD SWKTFNEVQ+LLSKTNGKV+GDLMTPAPLVVRE T+LED AR
Subjt:  VDEALEILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

A0A6J1J6R2 CBS domain-containing protein CBSX1, chloroplastic-like

1.9e-78

81.82

Show/hide

Query:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQI------FPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTS
        MESIGCS +SLSLAQFR  SFS+QELLFG RR  PSPIVHASV+Q       FPE RKSTSL+ASGTLMANS PSRSGVY VGDFMTR+EELHVVKPTTS
Subjt:  MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQI------FPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTS

Query:  VDEALEILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        VDEALEILVEKRITGFP        VGVVSDYDLLALDSISGGGRTD SMFPEV+SSWKTFNEVQ+LLSKTNGKV+GDLMTPAPLVVRE T+LED AR
Subjt:  VDEALEILVEKRITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

SwissProt top hits

e value

%identity

Alignment

O23193 CBS domain-containing protein CBSX1, chloroplastic

7.1e-51

61.96

Show/hide

Query:  LSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRK--STSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRIT
        LS    R  S      L   R     P    + ++ FP   +  S S AA  TLM NS   RSGVY VG+FMT+KE+LHVVKPTT+VDEALE+LVE RIT
Subjt:  LSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRK--STSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRIT

Query:  GFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        GFP        VG+VSDYDLLALDSISG GRT+ SMFPEVDS+WKTFN VQKLLSKTNGK+VGDLMTPAPLVV E T+LED A+
Subjt:  GFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

Q9C5D0 CBS domain-containing protein CBSX2, chloroplastic

4.9e-44

55.38

Show/hide

Query:  SLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKR
        SL   S       SFS+  L    R S  SP +  +V+  F         A +     NSVP+++G Y VGDFMT ++ LHVVKP+TSVD+ALE+LVEK+
Subjt:  SLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKR

Query:  ITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        +TG P        VGVVSDYDLLALDSISG  + DT++FP+VDS+WKTFNE+QKL+SKT GKVVGDLMTP+PLVVR+ T+LED AR
Subjt:  ITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

Arabidopsis top hits

e value

%identity

Alignment

AT4G34120.1 Cystathionine beta-synthase (CBS) family protein

3.5e-45

55.38

Show/hide

Query:  SLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKR
        SL   S       SFS+  L    R S  SP +  +V+  F         A +     NSVP+++G Y VGDFMT ++ LHVVKP+TSVD+ALE+LVEK+
Subjt:  SLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKR

Query:  ITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        +TG P        VGVVSDYDLLALDSISG  + DT++FP+VDS+WKTFNE+QKL+SKT GKVVGDLMTP+PLVVR+ T+LED AR
Subjt:  ITGFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

AT4G36910.1 Cystathionine beta-synthase (CBS) family protein

5.0e-52

61.96

Show/hide

Query:  LSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRK--STSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRIT
        LS    R  S      L   R     P    + ++ FP   +  S S AA  TLM NS   RSGVY VG+FMT+KE+LHVVKPTT+VDEALE+LVE RIT
Subjt:  LSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRK--STSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRIT

Query:  GFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR
        GFP        VG+VSDYDLLALDSISG GRT+ SMFPEVDS+WKTFN VQKLLSKTNGK+VGDLMTPAPLVV E T+LED A+
Subjt:  GFP--------VGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVAR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGTCGATTGGTTGTAGTTTGAGTTCTTTATCGTTGGCTCAATTCAGGGTGAAGAGTTTTTCGGTTCAGGAGCTGTTATTTGGTCATCGCCGGAGCCTTCCATCGCC
GATAGTTCATGCATCGGTGGCTCAGATCTTTCCGGAGCTTCGAAAATCTACTTCTCTTGCTGCTAGTGGTACCTTGATGGCCAATTCCGTGCCGTCAAGAAGTGGTGTAT
ACATAGTTGGTGACTTTATGACTAGGAAAGAGGAGTTGCATGTTGTAAAGCCCACAACCAGTGTTGATGAAGCATTAGAAATTCTGGTGGAGAAAAGGATCACAGGATTT
CCAGTTGGCGTAGTTTCTGACTACGACTTGTTAGCACTAGATTCCATCTCAGGTGGTGGAAGGACAGATACAAGCATGTTTCCTGAAGTTGACAGCTCGTGGAAAACATT
TAATGAGGTACAAAAGCTTCTAAGTAAAACTAATGGAAAGGTGGTCGGCGATTTGATGACACCCGCACCTCTTGTTGTTCGAGAAATTACCGATCTTGAGGATGTTGCTA
GGTTCAAAAACGCTTTTCTCCACCGTTTCCGTAACATATCATTTTTGCCCTTGCGCTTGAATTTTGAAGCGTGTTCCTTTCTATTTTGTCAAATGCAGATTATTGCTTCA
GACAAAGTATCGCCGACTTCCCGTGGTCGACGCCGATGGAAAGCTGGTAGAAACAGAGTCAATCTGCATGCTGTTAGCACAGAGGATTCTGAAGTGCAATCATACAATTT
TGGCTCATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MESIGCSLSSLSLAQFRVKSFSVQELLFGHRRSLPSPIVHASVAQIFPELRKSTSLAASGTLMANSVPSRSGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGF
PVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQKLLSKTNGKVVGDLMTPAPLVVREITDLEDVARFKNAFLHRFRNISFLPLRLNFEACSFLFCQMQIIAS
DKVSPTSRGRRRWKAGRNRVNLHAVSTEDSEVQSYNFGS

HG10018148 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome