; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10018170 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018170
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptioncrooked neck-like protein 1
Genome locationChr04:1245429..1245797
RNA-Seq ExpressionHG10018170
SyntenyHG10018170
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily
IPR045075 - Pre-mRNA-splicing factor Syf1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583599.1 Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]6.9e-5490.91Show/hide
Query:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW
        MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPKQKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQW
Subjt:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW

Query:  EESQKDFNRARPIWERALEVD
        EESQKDFNRAR +WERALEVD
Subjt:  EESQKDFNRARPIWERALEVD

KAG7019301.1 Crooked neck-like protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]6.9e-5490.91Show/hide
Query:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW
        MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPKQKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQW
Subjt:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW

Query:  EESQKDFNRARPIWERALEVD
        EESQKDFNRAR +WERALEVD
Subjt:  EESQKDFNRARPIWERALEVD

XP_022964730.1 crooked neck-like protein 1 [Cucurbita moschata]6.9e-5490.91Show/hide
Query:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW
        MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPKQKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQW
Subjt:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW

Query:  EESQKDFNRARPIWERALEVD
        EESQKDFNRAR +WERALEVD
Subjt:  EESQKDFNRARPIWERALEVD

XP_022970297.1 crooked neck-like protein 1 [Cucurbita maxima]6.9e-5490.91Show/hide
Query:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW
        MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPKQKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQW
Subjt:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW

Query:  EESQKDFNRARPIWERALEVD
        EESQKDFNRAR +WERALEVD
Subjt:  EESQKDFNRARPIWERALEVD

XP_023519624.1 crooked neck-like protein 1 [Cucurbita pepo subsp. pepo]6.9e-5490.91Show/hide
Query:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW
        MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPKQKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQW
Subjt:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW

Query:  EESQKDFNRARPIWERALEVD
        EESQKDFNRAR +WERALEVD
Subjt:  EESQKDFNRARPIWERALEVD

TrEMBL top hitse value%identityAlignment
A0A0A0LSI4 Uncharacterized protein4.4e-5490.08Show/hide
Query:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW
        MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPKQKITDP ELAD RLRKRKEFEDLIR VRWN++VWIKYAQW
Subjt:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW

Query:  EESQKDFNRARPIWERALEVD
        EESQKDFNRAR +WERALEVD
Subjt:  EESQKDFNRARPIWERALEVD

A0A5A7UA69 Crooked neck-like protein 14.4e-5490.08Show/hide
Query:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW
        MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPKQKITDP ELAD RLRKRKEFEDLIR VRWN++VWIKYAQW
Subjt:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW

Query:  EESQKDFNRARPIWERALEVD
        EESQKDFNRAR +WERALEVD
Subjt:  EESQKDFNRARPIWERALEVD

A0A6J1DG47 crooked neck-like protein 14.4e-5490.08Show/hide
Query:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW
        MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPKQKITDP ELAD RLRKRKEFEDLIR VRWN++VWIKYAQW
Subjt:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW

Query:  EESQKDFNRARPIWERALEVD
        EESQKDFNRAR +WERALEVD
Subjt:  EESQKDFNRARPIWERALEVD

A0A6J1HLN2 crooked neck-like protein 13.3e-5490.91Show/hide
Query:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW
        MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPKQKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQW
Subjt:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW

Query:  EESQKDFNRARPIWERALEVD
        EESQKDFNRAR +WERALEVD
Subjt:  EESQKDFNRARPIWERALEVD

A0A6J1HYQ8 crooked neck-like protein 13.3e-5490.91Show/hide
Query:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW
        MSSSKDADPTLGY+ RKDAEVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPKQKITDP ELAD RLRKRKEFEDLIR VRWNV+VWIKYAQW
Subjt:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW

Query:  EESQKDFNRARPIWERALEVD
        EESQKDFNRAR +WERALEVD
Subjt:  EESQKDFNRARPIWERALEVD

SwissProt top hitse value%identityAlignment
P17886 Protein crooked neck1.2e-2460.61Show/hide
Query:  KLSRPTRVKNKTPAPIQITAEQILLEARERQ-EAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALE
        K+ +  +VKNK PA +QITAEQ+L EA+ER  E    PPKQKI+DP ELAD + RKRK FED +R  R  V+ WIKYAQWEE Q++  RAR IWERAL+
Subjt:  KLSRPTRVKNKTPAPIQITAEQILLEARERQ-EAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALE

P63154 Crooked neck-like protein 11.0e-2359.41Show/hide
Query:  KLSRPTRVKNKTPAPIQITAEQILLEARERQ-EAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV
        ++ +  +VKNK PA +QITAEQ+L EA+ER+ E    PP+QKITD  EL D +LRKRK FED IR  R  ++ WIKYAQWEES K+  RAR I+ERAL+V
Subjt:  KLSRPTRVKNKTPAPIQITAEQILLEARERQ-EAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV

Query:  D
        D
Subjt:  D

P63155 Crooked neck-like protein 11.0e-2359.41Show/hide
Query:  KLSRPTRVKNKTPAPIQITAEQILLEARERQ-EAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV
        ++ +  +VKNK PA +QITAEQ+L EA+ER+ E    PP+QKITD  EL D +LRKRK FED IR  R  ++ WIKYAQWEES K+  RAR I+ERAL+V
Subjt:  KLSRPTRVKNKTPAPIQITAEQILLEARERQ-EAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV

Query:  D
        D
Subjt:  D

Q5BDX1 Pre-mRNA-splicing factor clf12.3e-2356.7Show/hide
Query:  PTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEVDN
        P RVKNK PAP+QI+AEQ+L EA +RQE  ++ P Q+  D  EL + + RKRKEFED +R  R N+N W++YA WE  QK+F RAR I+ERAL+VD+
Subjt:  PTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEVDN

Q9BZJ0 Crooked neck-like protein 11.0e-2359.41Show/hide
Query:  KLSRPTRVKNKTPAPIQITAEQILLEARERQ-EAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV
        ++ +  +VKNK PA +QITAEQ+L EA+ER+ E    PP+QKITD  EL D +LRKRK FED IR  R  ++ WIKYAQWEES K+  RAR I+ERAL+V
Subjt:  KLSRPTRVKNKTPAPIQITAEQILLEARERQ-EAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALEV

Query:  D
        D
Subjt:  D

Arabidopsis top hitse value%identityAlignment
AT3G13210.1 crooked neck protein, putative / cell cycle protein, putative1.9e-3865Show/hide
Query:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW
        M+S KD+D  LGY+ RKDAE+KL R T+VKNKTPAPIQITAEQIL EARERQEA+ RPP Q ITD  EL+D RLR+RKEFED IR  R N  VW+KYA +
Subjt:  MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQW

Query:  EESQKDFNRARPIWERALEV
        E   K  N AR +W+RA+ +
Subjt:  EESQKDFNRARPIWERALEV

AT3G51110.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.8e-3169.47Show/hide
Query:  PTRVKNKTPAPIQITAEQILLEARERQEAQI-RPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALE
        P  VKNKTPAP+QITAEQ+L EARER++++I RPPKQKITD  ELA+ RLR+RKEFED IR  + N  VW++YA WEESQKD +RAR +WERALE
Subjt:  PTRVKNKTPAPIQITAEQILLEARERQEAQI-RPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWERALE

AT5G41770.1 crooked neck protein, putative / cell cycle protein, putative5.5e-4977.5Show/hide
Query:  SSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWE
        S  KD+D TLGY+ RKD EVKL RPTRVKNKTPAPIQITAEQIL EARERQEA+IRPPKQKITD  EL+D RLR+RKEFED IR  RWN+ VW+KYAQWE
Subjt:  SSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWE

Query:  ESQKDFNRARPIWERALEVD
        ESQKD+ RAR +WERA+E D
Subjt:  ESQKDFNRARPIWERALEVD

AT5G45990.1 crooked neck protein, putative / cell cycle protein, putative1.1e-4178.64Show/hide
Query:  KDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWER
        KDAEVKL R TRVKNKTPAP+QITAEQIL EARERQEA+IRPPKQKITD  EL+D RLR+RKEFED IR  RWN+ VW+KYA+WEESQ D+ RAR +WER
Subjt:  KDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRARPIWER

Query:  ALE
        ALE
Subjt:  ALE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCATCCAAAGATGCGGATCCAACCCTAGGCTACGTCGCTCGAAAGGATGCAGAGGTGAAGTTGTCGCGACCCACTAGGGTGAAGAACAAGACTCCGGCTCCAAT
TCAGATAACTGCAGAGCAGATCCTTCTTGAGGCTCGAGAACGACAGGAGGCGCAAATTAGACCGCCCAAACAAAAAATTACAGATCCGATTGAACTTGCTGATTGTCGCC
TACGCAAGCGGAAGGAGTTCGAAGACCTTATACGCCTTGTCAGGTGGAATGTTAATGTTTGGATCAAGTATGCTCAATGGGAAGAGTCTCAAAAGGACTTCAATCGGGCT
CGTCCTATTTGGGAGCGTGCCCTTGAGGTCGATAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCATCCAAAGATGCGGATCCAACCCTAGGCTACGTCGCTCGAAAGGATGCAGAGGTGAAGTTGTCGCGACCCACTAGGGTGAAGAACAAGACTCCGGCTCCAAT
TCAGATAACTGCAGAGCAGATCCTTCTTGAGGCTCGAGAACGACAGGAGGCGCAAATTAGACCGCCCAAACAAAAAATTACAGATCCGATTGAACTTGCTGATTGTCGCC
TACGCAAGCGGAAGGAGTTCGAAGACCTTATACGCCTTGTCAGGTGGAATGTTAATGTTTGGATCAAGTATGCTCAATGGGAAGAGTCTCAAAAGGACTTCAATCGGGCT
CGTCCTATTTGGGAGCGTGCCCTTGAGGTCGATAACTAA
Protein sequenceShow/hide protein sequence
MSSSKDADPTLGYVARKDAEVKLSRPTRVKNKTPAPIQITAEQILLEARERQEAQIRPPKQKITDPIELADCRLRKRKEFEDLIRLVRWNVNVWIKYAQWEESQKDFNRA
RPIWERALEVDN