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HG10018171 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018171
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptioncrooked neck-like protein 1
Genome locationChr04:1247593..1252518
RNA-Seq ExpressionHG10018171
SyntenyHG10018171
Gene Ontology termsGO:0000245 - spliceosomal complex assembly (biological process)
GO:0000974 - Prp19 complex (cellular component)
GO:0071007 - U2-type catalytic step 2 spliceosome (cellular component)
GO:0071014 - post-mRNA release spliceosomal complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR045075 - Pre-mRNA-splicing factor Syf1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052082.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.1e-2695.52Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M  SFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYR KKQK
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK

KAE8649459.1 hypothetical protein Csa_018901 [Cucumis sativus]5.1e-2695.52Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M  SFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYR KKQK
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK

XP_008462238.1 PREDICTED: crooked neck-like protein 1 [Cucumis melo]5.1e-2695.52Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M  SFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYR KKQK
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK

XP_031739528.1 crooked neck-like protein 1 [Cucumis sativus]5.1e-2695.52Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M  SFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYR KKQK
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK

XP_031742735.1 crooked neck-like protein 1 [Cucumis sativus]5.1e-2695.52Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M  SFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYR KKQK
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK

TrEMBL top hitse value%identityAlignment
A0A1S3CGH7 crooked neck-like protein 12.5e-2695.52Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M  SFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYR KKQK
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK

A0A5D3BN88 Ty3-gypsy retrotransposon protein2.5e-2695.52Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M  SFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYR KKQK
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK

A0A6J1DG47 crooked neck-like protein 11.2e-2592.54Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M ASFG+LGDVSLVQSKLPKKLKKRRQI +EDGPAGFEEYIDYLFPEETQTTNLKILEAAYR KKQK
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK

A0A6J1HLN2 crooked neck-like protein 17.2e-2694.03Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M  SFGELGDVSLVQSKLPKKLKKRRQI SEDGPAGFEEYIDYLFPEETQTTNLKILEAAYR KKQK
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK

A0A6J1HYQ8 crooked neck-like protein 17.2e-2694.03Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M  SFGELGDVSLVQSKLPKKLKKRRQI SEDGPAGFEEYIDYLFPEETQTTNLKILEAAYR KKQK
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK

SwissProt top hitse value%identityAlignment
P17886 Protein crooked neck4.7e-0646.67Show/hide
Query:  DVSLVQSKLPKKLKKRRQIVSEDG-PAGFEEYIDYLFPE-ETQTTNLKILEAAYRCKKQK
        ++  V  K+P+++KKR++IVS++G   G+EE  DY+FPE E    NLK+L AA   K QK
Subjt:  DVSLVQSKLPKKLKKRRQIVSEDG-PAGFEEYIDYLFPE-ETQTTNLKILEAAYRCKKQK

P63154 Crooked neck-like protein 11.1e-0746.15Show/hide
Query:  FGELGDVSLVQSKLPKKLKKRRQIVSEDG-PAGFEEYIDYLFPEE-TQTTNLKILEAAYRCKKQK
        FG + D   V   +P+K+KKRR++ ++DG  AG+EEY DY+FPE+     NLK+L  A   KKQ+
Subjt:  FGELGDVSLVQSKLPKKLKKRRQIVSEDG-PAGFEEYIDYLFPEE-TQTTNLKILEAAYRCKKQK

P63155 Crooked neck-like protein 11.1e-0746.15Show/hide
Query:  FGELGDVSLVQSKLPKKLKKRRQIVSEDG-PAGFEEYIDYLFPEE-TQTTNLKILEAAYRCKKQK
        FG + D   V   +P+K+KKRR++ ++DG  AG+EEY DY+FPE+     NLK+L  A   KKQ+
Subjt:  FGELGDVSLVQSKLPKKLKKRRQIVSEDG-PAGFEEYIDYLFPEE-TQTTNLKILEAAYRCKKQK

Q54XP4 Crooked neck-like protein 14.2e-0746.97Show/hide
Query:  SFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQT--TNLKILEAAYRCKKQK
        +FG    ++ V  K+P+++ KRR     DG  G EEY DY+FPEE ++  T+LK+LEAA R KK K
Subjt:  SFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQT--TNLKILEAAYRCKKQK

Q9BZJ0 Crooked neck-like protein 11.5e-0746.15Show/hide
Query:  FGELGDVSLVQSKLPKKLKKRRQIVSEDG-PAGFEEYIDYLFPEE-TQTTNLKILEAAYRCKKQK
        FG   D   V   +P+K+KKRR++ ++DG  AG+EEY DY+FPE+     NLK+L  A   KKQ+
Subjt:  FGELGDVSLVQSKLPKKLKKRRQIVSEDG-PAGFEEYIDYLFPEE-TQTTNLKILEAAYRCKKQK

Arabidopsis top hitse value%identityAlignment
AT3G13210.1 crooked neck protein, putative / cell cycle protein, putative6.5e-1965.67Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M   FG+LGDV +VQSKLPKK+KKR+    EDG   +EEY DYLFPEE++TT+LKILEAA++ KKQK
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK

AT5G41770.1 crooked neck protein, putative / cell cycle protein, putative1.9e-2376.12Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M +SFG LGDVS+VQSKLPKKLKKR+ I  EDG   +EEYIDYL+PEE+QTTNLKILEAAY+ KKQK
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK

AT5G45990.1 crooked neck protein, putative / cell cycle protein, putative6.9e-2171.64Show/hide
Query:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK
        M   FGELGDVS+VQSKLPKKLKKR+    EDG   +EEY DYLFPEE+ TTNLKILEAAY+ KK K
Subjt:  MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCAAGTTTTGGTGAGCTTGGTGATGTCAGCTTAGTGCAGTCTAAGCTTCCAAAGAAGCTGAAGAAGAGGCGTCAAATTGTTAGTGAGGATGGTCCGGCTGGGTT
CGAGGAATACATAGATTACTTGTTCCCTGAAGAAACACAAACTACAAATCTCAAGATCCTTGAAGCTGCATACCGTTGTAAGAAGCAGAAAACAACACCGATGACCAACT
TTGGCAACAATCATCACCAGGCAACATGCTCTGACGACCACATCTGGTGGCCGACTCTCGCGATCAATTATGTGACCATCTCTGATGCCCAACTCCGACAACAACCATAC
CATTGGCAACATATACTTCGACAACCACCTCCTACGGCCAAACTCCGACAACCACCTTCGCGCAACGATCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCAAGTTTTGGTGAGCTTGGTGATGTCAGCTTAGTGCAGTCTAAGCTTCCAAAGAAGCTGAAGAAGAGGCGTCAAATTGTTAGTGAGGATGGTCCGGCTGGGTT
CGAGGAATACATAGATTACTTGTTCCCTGAAGAAACACAAACTACAAATCTCAAGATCCTTGAAGCTGCATACCGTTGTAAGAAGCAGAAAACAACACCGATGACCAACT
TTGGCAACAATCATCACCAGGCAACATGCTCTGACGACCACATCTGGTGGCCGACTCTCGCGATCAATTATGTGACCATCTCTGATGCCCAACTCCGACAACAACCATAC
CATTGGCAACATATACTTCGACAACCACCTCCTACGGCCAAACTCCGACAACCACCTTCGCGCAACGATCTCTGA
Protein sequenceShow/hide protein sequence
MAASFGELGDVSLVQSKLPKKLKKRRQIVSEDGPAGFEEYIDYLFPEETQTTNLKILEAAYRCKKQKTTPMTNFGNNHHQATCSDDHIWWPTLAINYVTISDAQLRQQPY
HWQHILRQPPPTAKLRQPPSRNDL