CuGenDBv2

Gene ID	HG10018191
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	WD repeat-containing protein RUP2-like
Genome location	Chr04:1419969..1420297
RNA-Seq Expression	HG10018191
Synteny	HG10018191
Gene Ontology terms	GO:0010224 - response to UV-B (biological process) GO:0005515 - protein binding (molecular function) GO:0016874 - ligase activity (molecular function)
InterPro domains	IPR015943 - WD40/YVTN repeat-like-containing domain superfamily IPR036322 - WD40-repeat-containing domain superfamily IPR044616 - WD repeat-containing protein RUP1/2

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6571808.1 WD repeat-containing protein RUP2, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-18

72.58

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Query:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA
        +DP+VGASGS+DG  QVWDT CDG  C+AVVQPS+VRS +CCVEFNPY   LVVVGC +RKA
Subjt:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA

XP_022952662.1 WD repeat-containing protein RUP2-like [Cucurbita moschata]

1.4e-18

74.19

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Query:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA
        +DP+VGASGS+DG  QVWDT CDG  C+AVVQPSVVRS +CCVEFNPY   LVVVGC +RKA
Subjt:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA

XP_022971842.1 WD repeat-containing protein RUP2-like [Cucurbita maxima]

3.1e-18

72.58

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Query:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA
        +DP+VGASGS+DG  QVWDT CDG  C+AVVQPS+VRS +CCVEFNPY   LVVVGC +RKA
Subjt:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA

XP_023554180.1 WD repeat-containing protein RUP2-like [Cucurbita pepo subsp. pepo]

9.1e-18

70.97

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Query:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA
        ++P+VGASGS+DG  QVWDT CDG  C+AVVQPS+VRS +CCVEFNPY   LVVVGC +RKA
Subjt:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA

XP_038887335.1 WD repeat-containing protein RUP2-like [Benincasa hispida]

2.8e-19

74.19

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Query:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA
        +DP+VGASGS+DG  QVWDT CDGG C+AVVQPSVVRS +CCVEFNPY   LV VGC +RKA
Subjt:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHK2 Ubiquitin ligase protein cop1

1.3e-17

67.74

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Query:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA
        ++P+VGASGS+DG  QVWDT C+ G C+AVVQPSVVRS++CCVEFNP+   LV VGC +RKA
Subjt:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA

A0A1S3CRR9 WD repeat-containing protein RUP2

7.5e-18

69.35

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Query:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA
        ++P+VGASGS+DG  QVWDT C+ G C+AVVQPSVVRS +CCVEFNPY   LV VGC +RKA
Subjt:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA

A0A5A7T553 WD repeat-containing protein RUP2-like

7.5e-18

69.35

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Query:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA
        ++P+VGASGS+DG  QVWDT C+ G C+AVVQPSVVRS +CCVEFNPY   LV VGC +RKA
Subjt:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA

A0A6J1GKZ5 WD repeat-containing protein RUP2-like

6.8e-19

74.19

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Query:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA
        +DP+VGASGS+DG  QVWDT CDG  C+AVVQPSVVRS +CCVEFNPY   LVVVGC +RKA
Subjt:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA

A0A6J1I327 WD repeat-containing protein RUP2-like

1.5e-18

72.58

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Query:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA
        +DP+VGASGS+DG  QVWDT CDG  C+AVVQPS+VRS +CCVEFNPY   LVVVGC +RKA
Subjt:  MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA

SwissProt top hits

e value

%identity

Alignment

Q9FFA7 WD repeat-containing protein RUP2

1.6e-09

51.72

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Query:  VGASGSNDGKTQVWDTCCDGGGCMAVVQPS-VVRSSICCVEFNPYSSKLVVVGCTNRK
        VGASGS+DG  QVWD  C     + VV+P+ + RS++CCVEF+P     V VGC +RK
Subjt:  VGASGSNDGKTQVWDTCCDGGGCMAVVQPS-VVRSSICCVEFNPYSSKLVVVGCTNRK

Q9LTJ6 WD repeat-containing protein RUP1

8.3e-06

42.37

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Query:  IVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA
        ++GASGS+DG  Q+WD   +GG     V+P    ++IC VEF+P+    + VGC +R A
Subjt:  IVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA

Arabidopsis top hits

e value

%identity

Alignment

AT5G23730.1 Transducin/WD40 repeat-like superfamily protein

1.2e-10

51.72

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Query:  VGASGSNDGKTQVWDTCCDGGGCMAVVQPS-VVRSSICCVEFNPYSSKLVVVGCTNRK
        VGASGS+DG  QVWD  C     + VV+P+ + RS++CCVEF+P     V VGC +RK
Subjt:  VGASGSNDGKTQVWDTCCDGGGCMAVVQPS-VVRSSICCVEFNPYSSKLVVVGCTNRK

AT5G52250.1 Transducin/WD40 repeat-like superfamily protein

5.9e-07

42.37

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Query:  IVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA
        ++GASGS+DG  Q+WD   +GG     V+P    ++IC VEF+P+    + VGC +R A
Subjt:  IVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKA

Sequences

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CDS sequence

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ATGGATCCTATAGTCGGCGCTTCAGGGTCAAATGACGGCAAAACGCAAGTATGGGACACATGTTGCGACGGTGGGGGCTGCATGGCGGTGGTGCAACCGAGCGTGGTACG
AAGTTCGATTTGTTGTGTGGAATTCAACCCATACAGTAGCAAGTTGGTGGTGGTTGGATGCACAAATCGGAAAGCGAACAGACGGAGGGACCATGGTCTTGGCGAGTACA
AACGGATGGATGGTGGTGTCGGCTCATAG

mRNA sequence

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Protein sequence

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MDPIVGASGSNDGKTQVWDTCCDGGGCMAVVQPSVVRSSICCVEFNPYSSKLVVVGCTNRKANRRRDHGLGEYKRMDGGVGS

HG10018191 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome