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HG10018232 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018232
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
Genome locationChr04:2047368..2047958
RNA-Seq ExpressionHG10018232
SyntenyHG10018232
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_042974660.1 uncharacterized protein LOC122306292 [Carya illinoinensis]7.3e-0534.9Show/hide
Query:  SPPSVLGGAKLNIIHVDAACSVGLPLVGFECVMGSSSGSILASLFGCKEIGLIPICVEALVVFENLQLADRMDLQRLLVLSDSLAV------------DV
        SPPS  G  KLN   VD A S    + G   ++ +S G ++ S    +   +  + VEAL +   LQL   +++Q L++ SDSL V              
Subjt:  SPPSVLGGAKLNIIHVDAACSVGLPLVGFECVMGSSSGSILASLFGCKEIGLIPICVEALVVFENLQLADRMDLQRLLVLSDSLAV------------DV

Query:  VNLIADIKKLVASFSLVIFQHVSRSHNSAAHSLARLGFTGLNGLILEGA
         N+I + K+LV  F     QHV+RS N AAHSLA+ G +  N  +  GA
Subjt:  VNLIADIKKLVASFSLVIFQHVSRSHNSAAHSLARLGFTGLNGLILEGA
XP_042988698.1 uncharacterized protein LOC122316231 [Carya illinoinensis]3.0e-0633.74Show/hide
Query:  SPPSVLGGAKLNIIHVDAACSVGLPLVGFECVMGSSSGSILASLFGCKEIGLIPICVEALVVFENLQLADRMDLQRLLVLSDSLAV------------DV
        SPPS  G  KLN   VD A S    + G   ++  S G ++ S    +   +I + VEAL +   LQ    + +  L++ SDSL V              
Subjt:  SPPSVLGGAKLNIIHVDAACSVGLPLVGFECVMGSSSGSILASLFGCKEIGLIPICVEALVVFENLQLADRMDLQRLLVLSDSLAV------------DV

Query:  VNLIADIKKLVASFSLVIFQHVSRSHNSAAHSLARLGFTGLNGLILEGA-PAGVSQLYLNDFS
         N+I + K+L+  F +   QHVSRS+N AAHSLA+ G +  N  +  GA P+ +S +  +D S
Subjt:  VNLIADIKKLVASFSLVIFQHVSRSHNSAAHSLARLGFTGLNGLILEGA-PAGVSQLYLNDFS
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAACAGGGTATATGTTTCGTCAGTGGCATTAAAATGTGAATGGATTTTGAATTATGCAAAGGATTTCAGTGTGATTACGACATATTATAATTGCTCTTCTTTGGA
GTGCTCCCCGCCTTCTGTTTTGGGAGGGGCAAAGTTGAATATTATTCACGTGGATGCGGCTTGTAGTGTTGGTTTGCCTCTGGTTGGGTTTGAGTGTGTGATGGGATCAT
CTTCTGGCTCTATTCTTGCTTCTCTTTTCGGTTGTAAAGAGATAGGGCTTATTCCTATTTGTGTTGAGGCTTTGGTTGTATTTGAAAATCTTCAGTTAGCAGATCGAATG
GACCTCCAACGTCTACTTGTTCTGTCTGATTCATTAGCGGTAGATGTAGTAAACTTGATTGCTGACATAAAGAAGTTGGTTGCTTCTTTTTCATTGGTGATTTTTCAACA
TGTGTCTCGTTCTCATAATTCTGCGGCTCATTCGCTGGCTAGGTTGGGATTTACGGGATTGAATGGTTTGATTCTTGAGGGTGCTCCTGCAGGGGTATCTCAGTTGTATC
TTAATGATTTCTCTATTGTGAGTGACCGATTGGTCTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATAACAGGGTATATGTTTCGTCAGTGGCATTAAAATGTGAATGGATTTTGAATTATGCAAAGGATTTCAGTGTGATTACGACATATTATAATTGCTCTTCTTTGGA
GTGCTCCCCGCCTTCTGTTTTGGGAGGGGCAAAGTTGAATATTATTCACGTGGATGCGGCTTGTAGTGTTGGTTTGCCTCTGGTTGGGTTTGAGTGTGTGATGGGATCAT
CTTCTGGCTCTATTCTTGCTTCTCTTTTCGGTTGTAAAGAGATAGGGCTTATTCCTATTTGTGTTGAGGCTTTGGTTGTATTTGAAAATCTTCAGTTAGCAGATCGAATG
GACCTCCAACGTCTACTTGTTCTGTCTGATTCATTAGCGGTAGATGTAGTAAACTTGATTGCTGACATAAAGAAGTTGGTTGCTTCTTTTTCATTGGTGATTTTTCAACA
TGTGTCTCGTTCTCATAATTCTGCGGCTCATTCGCTGGCTAGGTTGGGATTTACGGGATTGAATGGTTTGATTCTTGAGGGTGCTCCTGCAGGGGTATCTCAGTTGTATC
TTAATGATTTCTCTATTGTGAGTGACCGATTGGTCTTGTAG
Protein sequenceShow/hide protein sequence
MNNRVYVSSVALKCEWILNYAKDFSVITTYYNCSSLECSPPSVLGGAKLNIIHVDAACSVGLPLVGFECVMGSSSGSILASLFGCKEIGLIPICVEALVVFENLQLADRM
DLQRLLVLSDSLAVDVVNLIADIKKLVASFSLVIFQHVSRSHNSAAHSLARLGFTGLNGLILEGAPAGVSQLYLNDFSIVSDRLVL