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HG10018273 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018273
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr04:2528522..2528932
RNA-Seq ExpressionHG10018273
SyntenyHG10018273
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG73320.1 hypothetical protein EZV62_001899 [Acer yangbiense]3.5e-0637.17Show/hide
Query:  RSSLVGFGGVIRYSAGTVLAY-LHGCPMSLAPDGAEALAILEGLRLAAIMDLSCILVLLDLMKVVQMINSRLDVFDDLDNYVVDIKSLIASFHYLSFQHV
        RS++VG G +IR  +G+V+A   HG  ++L PD AEA+ IL G+ LA    L  ++V  D   VV +INS + V  D+   + DI+  +      S   V
Subjt:  RSSLVGFGGVIRYSAGTVLAY-LHGCPMSLAPDGAEALAILEGLRLAAIMDLSCILVLLDLMKVVQMINSRLDVFDDLDNYVVDIKSLIASFHYLSFQHV

Query:  PCIHNFTVHKLAR
        P   N   H LA+
Subjt:  PCIHNFTVHKLAR
XP_023878301.1 uncharacterized protein LOC111990748 [Quercus suber]1.5e-0432.28Show/hide
Query:  LHVDVGCVERSSLVGFGGVIRYSAGTVLAYLHG-CPMSLAPDGAEALAILEGLRLAAIMDLSCILVLLDLMKVVQMINSRLDVFDDLDNYVVDIKSLIAS
        ++VD    ++      G +IR S G V+A L+   P   A D  EALA+ +G+ LA  + LS +++  D + V+Q +N      ++L + +  I+S+  S
Subjt:  LHVDVGCVERSSLVGFGGVIRYSAGTVLAYLHG-CPMSLAPDGAEALAILEGLRLAAIMDLSCILVLLDLMKVVQMINSRLDVFDDLDNYVVDIKSLIAS

Query:  FHYLSFQHVPCIHNFTVHKLARLGCRD
        F + +FQHV    N   H+LA+L  R+
Subjt:  FHYLSFQHVPCIHNFTVHKLARLGCRD
TrEMBL top hitse value%identityAlignment
A0A5C7IVJ7 RNase H domain-containing protein1.7e-0637.17Show/hide
Query:  RSSLVGFGGVIRYSAGTVLAY-LHGCPMSLAPDGAEALAILEGLRLAAIMDLSCILVLLDLMKVVQMINSRLDVFDDLDNYVVDIKSLIASFHYLSFQHV
        RS++VG G +IR  +G+V+A   HG  ++L PD AEA+ IL G+ LA    L  ++V  D   VV +INS + V  D+   + DI+  +      S   V
Subjt:  RSSLVGFGGVIRYSAGTVLAY-LHGCPMSLAPDGAEALAILEGLRLAAIMDLSCILVLLDLMKVVQMINSRLDVFDDLDNYVVDIKSLIASFHYLSFQHV

Query:  PCIHNFTVHKLAR
        P   N   H LA+
Subjt:  PCIHNFTVHKLAR
A0A6J1DX30 uncharacterized protein LOC1110248746.0e-0432.26Show/hide
Query:  LHVDVGCVERSSLVGFGGVIRYSAGTVLAYLH-GCPMSLAPDGAEALAILEGLRLAAIMDLSCILVLLDLMKVVQMINSRLDVFDDLDNYVVDIKSLIAS
        L+ D  C  R +   FG +IR S+ +++A      P  L+P  AE   ILEGL+ AA  + + + V  D +  +Q+I + +    D  N+V++I++L   
Subjt:  LHVDVGCVERSSLVGFGGVIRYSAGTVLAYLH-GCPMSLAPDGAEALAILEGLRLAAIMDLSCILVLLDLMKVVQMINSRLDVFDDLDNYVVDIKSLIAS

Query:  FHYLSFQHVPCIHNFTVHKLARLG
        F ++SF H     N   H LA+ G
Subjt:  FHYLSFQHVPCIHNFTVHKLARLG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATTTTATGAGAGTGATTTGTGTATTTTACATGTGGATGTGGGTTGTGTTGAGAGGTCTAGTTTGGTTGGATTTGGAGGGGTCATTCGCTATTCAGCGGGAACGGT
GTTGGCCTACTTGCATGGTTGTCCTATGTCGTTGGCTCCTGATGGTGCTGAAGCCCTTGCCATCCTTGAGGGTCTTCGTTTAGCTGCAATAATGGACTTATCATGTATTT
TGGTTTTGTTAGATTTGATGAAAGTGGTGCAGATGATTAACAGTAGGCTGGATGTGTTTGATGATTTGGATAATTATGTGGTTGATATCAAATCTTTAATTGCTTCCTTT
CATTATTTGTCTTTCCAACATGTGCCATGTATTCATAACTTTACCGTGCACAAATTGGCAAGATTGGGGTGTCGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACATTTTATGAGAGTGATTTGTGTATTTTACATGTGGATGTGGGTTGTGTTGAGAGGTCTAGTTTGGTTGGATTTGGAGGGGTCATTCGCTATTCAGCGGGAACGGT
GTTGGCCTACTTGCATGGTTGTCCTATGTCGTTGGCTCCTGATGGTGCTGAAGCCCTTGCCATCCTTGAGGGTCTTCGTTTAGCTGCAATAATGGACTTATCATGTATTT
TGGTTTTGTTAGATTTGATGAAAGTGGTGCAGATGATTAACAGTAGGCTGGATGTGTTTGATGATTTGGATAATTATGTGGTTGATATCAAATCTTTAATTGCTTCCTTT
CATTATTTGTCTTTCCAACATGTGCCATGTATTCATAACTTTACCGTGCACAAATTGGCAAGATTGGGGTGTCGGGATTGA
Protein sequenceShow/hide protein sequence
MTFYESDLCILHVDVGCVERSSLVGFGGVIRYSAGTVLAYLHGCPMSLAPDGAEALAILEGLRLAAIMDLSCILVLLDLMKVVQMINSRLDVFDDLDNYVVDIKSLIASF
HYLSFQHVPCIHNFTVHKLARLGCRD