; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10018274 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018274
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTranscription factor UPBEAT1-like
Genome locationChr04:2535329..2535712
RNA-Seq ExpressionHG10018274
SyntenyHG10018274
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039441.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]1.7e-3470.08Show/hide
Query:  MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLL
        MSSKTN LPNPLRNY RRRTKRSLT SRRRFHRRH    R  + T G        CS+VS KL ALQSLIPPQ  S + H Q RQ D+LFK+TADYIV+L
Subjt:  MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLL

Query:  KTRVVILQKLVDFFGSACSDSENAVIS
        KT+VVILQKLVDFFGSACSDS +AV+S
Subjt:  KTRVVILQKLVDFFGSACSDSENAVIS

KAG6578552.1 hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia]3.8e-2366.12Show/hide
Query:  MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRS-NNGTRGDTTHSSPCC---SDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADY
        MS KTN L N     LR  TKRSL DSRRRFHRRH  A+R+ N    G TT SSP      DVSAKL ALQSLIP QS       + RQT+QLFKETADY
Subjt:  MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRS-NNGTRGDTTHSSPCC---SDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADY

Query:  IVLLKTRVVILQKLVDFFGSA
        IVLLKT+VVILQKLVDFFGSA
Subjt:  IVLLKTRVVILQKLVDFFGSA

KAG7016112.1 hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-2366.12Show/hide
Query:  MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRS-NNGTRGDTTHSSPCC---SDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADY
        MS KTN L N     LR  TKRSL DSRRRFHRRH  A+R+ N    G+TT SSP      DVSAKL ALQSLIP QS       + RQT+QLFKETADY
Subjt:  MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRS-NNGTRGDTTHSSPCC---SDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADY

Query:  IVLLKTRVVILQKLVDFFGSA
        IVLLKT+VVILQKLVDFFGSA
Subjt:  IVLLKTRVVILQKLVDFFGSA

KAG7986517.1 hypothetical protein I3843_03G085300 [Carya illinoinensis]3.7e-1045.76Show/hide
Query:  RNYLRRRTKRSL--TDSRRRFHRRHCPALRS--NNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQ
        + +LRR  +R +  T SRRR H R C   RS  NNG R         CS+VS KL AL++LIP          +  + DQLF+ETA+YI+LL+TRVV+LQ
Subjt:  RNYLRRRTKRSL--TDSRRRFHRRHCPALRS--NNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQ

Query:  KLVDFFGSACSDSENAVI
        +L++F+GS  S  EN V+
Subjt:  KLVDFFGSACSDSENAVI

XP_022993697.1 uncharacterized protein LOC111489609 [Cucurbita maxima]4.1e-1758.4Show/hide
Query:  MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCS--------DVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKE
        M+ KT  L N     LR RTKRSL DS  R    H           G+TT SSPC S        DVSAKL ALQSLIP QS       +ARQT+QLFKE
Subjt:  MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCS--------DVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKE

Query:  TADYIVLLKTRVVILQKLVDFFGSA
        TADYIVLLKT+VVILQKLVDFFGSA
Subjt:  TADYIVLLKTRVVILQKLVDFFGSA

TrEMBL top hitse value%identityAlignment
A0A2N9EMQ7 Uncharacterized protein1.9e-1248Show/hide
Query:  SKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRS-NNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLK
        S T   P    +  RRR  R    SRRR   R C A R+ NNGT G  T     CS+VS KL AL++LIP      + +D+  + DQLFKETADYIVLL+
Subjt:  SKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRS-NNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLK

Query:  TRVVILQKLVDFFGSACSDSENAVI
        T+VVILQ+LV+ +GS+ + S+N V+
Subjt:  TRVVILQKLVDFFGSACSDSENAVI

A0A5B6ZTC9 Uncharacterized protein7.3e-1247.83Show/hide
Query:  RNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVD
        ++ + R  +R     R+RFHR    +    NG RG    SSP CS VS KL AL++LIP       AH    + DQLF+ETADYIVLL+TRV+ILQ+L+D
Subjt:  RNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVD

Query:  FFGSACSDSENAVIS
        F+GS  S+ +NA+ S
Subjt:  FFGSACSDSENAVIS

A0A5D3BNP5 Transcription factor UPBEAT1-like8.1e-3570.08Show/hide
Query:  MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLL
        MSSKTN LPNPLRNY RRRTKRSLT SRRRFHRRH    R  + T G        CS+VS KL ALQSLIPPQ  S + H Q RQ D+LFK+TADYIV+L
Subjt:  MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLL

Query:  KTRVVILQKLVDFFGSACSDSENAVIS
        KT+VVILQKLVDFFGSACSDS +AV+S
Subjt:  KTRVVILQKLVDFFGSACSDSENAVIS

A0A5N6QW57 Uncharacterized protein5.3e-1050.46Show/hide
Query:  RNYLRRRTKRSL---TDSRRRFHRRHCPALRS-NNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQ
        R  L RRT+R L   T +RRR   R C A RS NNG R         C+ VS KL AL++LIP  +  T       + DQLFKETA+YIVLL+T+VVILQ
Subjt:  RNYLRRRTKRSL---TDSRRRFHRRHCPALRS-NNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQ

Query:  KLVDFFGSA
        +LV+F+GS+
Subjt:  KLVDFFGSA

A0A6J1JTK8 uncharacterized protein LOC1114896092.0e-1758.4Show/hide
Query:  MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCS--------DVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKE
        M+ KT  L N     LR RTKRSL DS  R    H           G+TT SSPC S        DVSAKL ALQSLIP QS       +ARQT+QLFKE
Subjt:  MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCS--------DVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKE

Query:  TADYIVLLKTRVVILQKLVDFFGSA
        TADYIVLLKT+VVILQKLVDFFGSA
Subjt:  TADYIVLLKTRVVILQKLVDFFGSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29370.1 unknown protein9.2e-0733.68Show/hide
Query:  RSNNGTRGDTTHSSPCCSD--------VSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVDFFGSACSDSENAVI
        R+N  +R    H+  CC +        V  KL AL+SL+PP       +    +T++LF+ETA+YIV L+T+VV+L+KL++ + ++    ++ V+
Subjt:  RSNNGTRGDTTHSSPCCSD--------VSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKLVDFFGSACSDSENAVI

AT5G39240.1 unknown protein4.4e-0945.33Show/hide
Query:  SAKLAALQSLIPPQSTSTSAHDQ---------ARQTDQLFKETADYIVLLKTRVVILQKLVDFFGSACSDSENAV
        S KL AL+SL+PP S  T    Q           +T+QLF+ETADYIV L+ +VV+LQKL++ +GS+    +N V
Subjt:  SAKLAALQSLIPPQSTSTSAHDQ---------ARQTDQLFKETADYIVLLKTRVVILQKLVDFFGSACSDSENAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCCAAAACCAACGCACTCCCAAATCCTCTCAGAAATTACCTCAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGTTTCCACCGCCGTCACTGCCC
CGCCCTCCGCTCTAACAATGGAACCCGGGGGGATACGACCCACTCATCTCCCTGTTGCTCCGACGTCTCCGCCAAATTGGCCGCCCTGCAGAGCCTCATTCCGCCACAAT
CCACCTCCACCTCCGCCCACGACCAAGCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCGTCATTTTGCAGAAGCTG
GTTGATTTTTTTGGATCCGCCTGCAGCGACTCCGAAAACGCCGTCATTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCCAAAACCAACGCACTCCCAAATCCTCTCAGAAATTACCTCAGAAGAAGAACCAAACGATCTTTAACCGATTCCCGCCGTCGTTTCCACCGCCGTCACTGCCC
CGCCCTCCGCTCTAACAATGGAACCCGGGGGGATACGACCCACTCATCTCCCTGTTGCTCCGACGTCTCCGCCAAATTGGCCGCCCTGCAGAGCCTCATTCCGCCACAAT
CCACCTCCACCTCCGCCCACGACCAAGCCCGCCAAACGGATCAGTTGTTCAAGGAAACTGCCGATTACATTGTTCTTTTGAAAACCCGGGTCGTCATTTTGCAGAAGCTG
GTTGATTTTTTTGGATCCGCCTGCAGCGACTCCGAAAACGCCGTCATTTCATAG
Protein sequenceShow/hide protein sequence
MSSKTNALPNPLRNYLRRRTKRSLTDSRRRFHRRHCPALRSNNGTRGDTTHSSPCCSDVSAKLAALQSLIPPQSTSTSAHDQARQTDQLFKETADYIVLLKTRVVILQKL
VDFFGSACSDSENAVIS