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HG10018317 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018317
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionF-box domain-containing protein
Genome locationChr04:2979646..2980308
RNA-Seq ExpressionHG10018317
SyntenyHG10018317
Gene Ontology termsNA
InterPro domainsIPR017451 - F-box associated interaction domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039382.1 F-box protein [Cucumis melo var. makuwa]4.0e-2852.47Show/hide
Query:  FCNPKMNCIDID-KMNLVASFGFDERDCSIISILNFCNGLLFISKSNGDDIDVC-GILNLMTNEFFKLYLNE-EEDIYLYGFGFSRKTKRYKLFR----A
        +CNPK++C+DID K + VASFGF E D S I+I+N CNGLL+I K   D +  C GILN MTNEF ++   E E D++  GFGFS +TK+YKLFR     
Subjt:  FCNPKMNCIDID-KMNLVASFGFDERDCSIISILNFCNGLLFISKSNGDDIDVC-GILNLMTNEFFKLYLNE-EEDIYLYGFGFSRKTKRYKLFR----A

Query:  TTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGK--EKGKEFVIY
            ++    MEI  F   +G K+WRHF+ LPF     G YLNGVIYWIGK  EK  E VIY
Subjt:  TTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGK--EKGKEFVIY

KAE8648955.1 hypothetical protein Csa_007901 [Cucumis sativus]2.2e-3456.49Show/hide
Query:  MNCIDIDKM-NLVASFGFDERDCSI-ISILNFCNGLLFISKSNGDDIDVCGILNLMTNEFFKLYLN---EEEDI-YLYGFGFSRKTKRYKLFRATTGQEE
        M CIDI++  NL+ASF FD  D    I ILN CNGLL+I K  GD+    GILN MTNEFF L      + EDI   YGFGF+ KTK+YKLF+A   +E+
Subjt:  MNCIDIDKM-NLVASFGFDERDCSI-ISILNFCNGLLFISKSNGDDIDVCGILNLMTNEFFKLYLN---EEEDI-YLYGFGFSRKTKRYKLFRATTGQEE

Query:  YTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGKEKGKEFVIY
            ME+MRFG    TKEWRH  CLPF F+C G YLNGVIYWIG++K  + VIY
Subjt:  YTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGKEKGKEFVIY

XP_004141601.1 F-box protein At3g07870 [Cucumis sativus]1.4e-3658.49Show/hide
Query:  RFCNPKMNCIDIDKMNLVASFGF-DERDCSIISILNFCNGLLFISKSNGDDIDVC-GILNLMTNEFFKLYLNE-EEDIYLYGFGFSRKTKRYKLFRAT-T
        R CN K++CIDID M+ V SFGF D+ + S +SI++ C+ LL ISK    D D+C GILN MTNEF +L   E +E    YGFGF+ KTK+YKLFR T  
Subjt:  RFCNPKMNCIDIDKMNLVASFGF-DERDCSIISILNFCNGLLFISKSNGDDIDVC-GILNLMTNEFFKLYLNE-EEDIYLYGFGFSRKTKRYKLFRAT-T

Query:  GQEEYTCTMEIMRFGGRSGTK-EWRHFDCLPFDFHCCGAYLNGVIYWIGKEKGKEFVIY
         + E+   MEIMRFG RS TK EWRHF C P  F   GAYLNGVIYW+GKEKGK +VIY
Subjt:  GQEEYTCTMEIMRFGGRSGTK-EWRHFDCLPFDFHCCGAYLNGVIYWIGKEKGKEFVIY

XP_004141602.1 F-box protein At3g07870 [Cucumis sativus]4.3e-4654Show/hide
Query:  MVIDYASSCKFVPNAFFVSTYDI-----CPPNCNRVCRTPRFCNPKMNCIDIDKM-NLVASFGFDERDCSI-ISILNFCNGLLFISKSNGDDIDVCGILN
        ++++YASS KF+PN F  ++Y+I     C  NCN  CR    CNPKM CIDI++  NL+ASF FD  D    I ILN CNGLL+I K  GD+    GILN
Subjt:  MVIDYASSCKFVPNAFFVSTYDI-----CPPNCNRVCRTPRFCNPKMNCIDIDKM-NLVASFGFDERDCSI-ISILNFCNGLLFISKSNGDDIDVCGILN

Query:  LMTNEFFKLYLN---EEEDI-YLYGFGFSRKTKRYKLFRATTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGKEKGKEFVIY
         MTNEFF L      + EDI   YGFGF+ KTK+YKLF+A   +E+    ME+MRFG    TKEWRH  CLPF F+C G YLNGVIYWIG++K  + VIY
Subjt:  LMTNEFFKLYLN---EEEDI-YLYGFGFSRKTKRYKLFRATTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGKEKGKEFVIY

XP_008459707.1 PREDICTED: F-box protein At3g07870-like [Cucumis melo]5.1e-3149.75Show/hide
Query:  MVIDYASSCKFVP-NAFFVSTYDICPPNCNRVCRTPRFCNPKMNCIDID-KMNLVASFGFDERDCSIISILNFCNGLLFISKSNGDDIDVC-GILNLMTN
        +V++YASS KF+P    F+S  D    N      TP +CNPK++C+DID K + VASFGF E D S I+I+N CNGLL+I K   D +  C GILN MTN
Subjt:  MVIDYASSCKFVP-NAFFVSTYDICPPNCNRVCRTPRFCNPKMNCIDID-KMNLVASFGFDERDCSIISILNFCNGLLFISKSNGDDIDVC-GILNLMTN

Query:  EFFKLYLNE-EEDIYLYGFGFSRKTKRYKLFR----ATTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGK--EKGKEFVIY
        EF ++   E E D++  GFGFS +TK+YKLFR         ++    MEI  F   +G K+WRHF+ LPF     G YLNGVIYWIGK  EK  E VIY
Subjt:  EFFKLYLNE-EEDIYLYGFGFSRKTKRYKLFR----ATTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGK--EKGKEFVIY

TrEMBL top hitse value%identityAlignment
A0A0A0KSJ2 F-box domain-containing protein2.1e-4654Show/hide
Query:  MVIDYASSCKFVPNAFFVSTYDI-----CPPNCNRVCRTPRFCNPKMNCIDIDKM-NLVASFGFDERDCSI-ISILNFCNGLLFISKSNGDDIDVCGILN
        ++++YASS KF+PN F  ++Y+I     C  NCN  CR    CNPKM CIDI++  NL+ASF FD  D    I ILN CNGLL+I K  GD+    GILN
Subjt:  MVIDYASSCKFVPNAFFVSTYDI-----CPPNCNRVCRTPRFCNPKMNCIDIDKM-NLVASFGFDERDCSI-ISILNFCNGLLFISKSNGDDIDVCGILN

Query:  LMTNEFFKLYLN---EEEDI-YLYGFGFSRKTKRYKLFRATTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGKEKGKEFVIY
         MTNEFF L      + EDI   YGFGF+ KTK+YKLF+A   +E+    ME+MRFG    TKEWRH  CLPF F+C G YLNGVIYWIG++K  + VIY
Subjt:  LMTNEFFKLYLN---EEEDI-YLYGFGFSRKTKRYKLFRATTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGKEKGKEFVIY

A0A0A0KUJ1 FBA_3 domain-containing protein6.7e-3758.49Show/hide
Query:  RFCNPKMNCIDIDKMNLVASFGF-DERDCSIISILNFCNGLLFISKSNGDDIDVC-GILNLMTNEFFKLYLNE-EEDIYLYGFGFSRKTKRYKLFRAT-T
        R CN K++CIDID M+ V SFGF D+ + S +SI++ C+ LL ISK    D D+C GILN MTNEF +L   E +E    YGFGF+ KTK+YKLFR T  
Subjt:  RFCNPKMNCIDIDKMNLVASFGF-DERDCSIISILNFCNGLLFISKSNGDDIDVC-GILNLMTNEFFKLYLNE-EEDIYLYGFGFSRKTKRYKLFRAT-T

Query:  GQEEYTCTMEIMRFGGRSGTK-EWRHFDCLPFDFHCCGAYLNGVIYWIGKEKGKEFVIY
         + E+   MEIMRFG RS TK EWRHF C P  F   GAYLNGVIYW+GKEKGK +VIY
Subjt:  GQEEYTCTMEIMRFGGRSGTK-EWRHFDCLPFDFHCCGAYLNGVIYWIGKEKGKEFVIY

A0A0A0LWG1 F-box domain-containing protein3.1e-2640.53Show/hide
Query:  MVIDYASS--CKFVPNAFFVSTYDICPPNCNRVCRTPRFCNPKMNCIDIDKMNLVASFGFDERDCSI--------------ISILNFCNGLLFISKSNGD
        +V+DYASS   +F+ NAF +ST D      N      + CNPKM+CI++D   L   F FD     I              I +   CNGL+ ISK +  
Subjt:  MVIDYASS--CKFVPNAFFVSTYDICPPNCNRVCRTPRFCNPKMNCIDIDKMNLVASFGFDERDCSI--------------ISILNFCNGLLFISKSNGD

Query:  DIDVC-GILNLMTNEFFKLYLNEE-EDIYLYGFGFSRKTKRYKLFRA---------TTGQEEYTCTMEIMRFGGRSGT-------KEWRHFDCLPFDFHC
        D   C GI N MTNEF ++  +   +D YLYGFGFS  TK+YKLFR          T+   +   TME++ F GRSGT        +WR    LPF+   
Subjt:  DIDVC-GILNLMTNEFFKLYLNEE-EDIYLYGFGFSRKTKRYKLFRA---------TTGQEEYTCTMEIMRFGGRSGT-------KEWRHFDCLPFDFHC

Query:  CGAYLNGVIYWIGKEKGKE----FVIY
         G YLNG+IYW+ KEKGK+    +VIY
Subjt:  CGAYLNGVIYWIGKEKGKE----FVIY

A0A1S3CB99 F-box protein At3g07870-like2.5e-3149.75Show/hide
Query:  MVIDYASSCKFVP-NAFFVSTYDICPPNCNRVCRTPRFCNPKMNCIDID-KMNLVASFGFDERDCSIISILNFCNGLLFISKSNGDDIDVC-GILNLMTN
        +V++YASS KF+P    F+S  D    N      TP +CNPK++C+DID K + VASFGF E D S I+I+N CNGLL+I K   D +  C GILN MTN
Subjt:  MVIDYASSCKFVP-NAFFVSTYDICPPNCNRVCRTPRFCNPKMNCIDID-KMNLVASFGFDERDCSIISILNFCNGLLFISKSNGDDIDVC-GILNLMTN

Query:  EFFKLYLNE-EEDIYLYGFGFSRKTKRYKLFR----ATTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGK--EKGKEFVIY
        EF ++   E E D++  GFGFS +TK+YKLFR         ++    MEI  F   +G K+WRHF+ LPF     G YLNGVIYWIGK  EK  E VIY
Subjt:  EFFKLYLNE-EEDIYLYGFGFSRKTKRYKLFR----ATTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGK--EKGKEFVIY

A0A5A7T7C6 F-box protein2.0e-2852.47Show/hide
Query:  FCNPKMNCIDID-KMNLVASFGFDERDCSIISILNFCNGLLFISKSNGDDIDVC-GILNLMTNEFFKLYLNE-EEDIYLYGFGFSRKTKRYKLFR----A
        +CNPK++C+DID K + VASFGF E D S I+I+N CNGLL+I K   D +  C GILN MTNEF ++   E E D++  GFGFS +TK+YKLFR     
Subjt:  FCNPKMNCIDID-KMNLVASFGFDERDCSIISILNFCNGLLFISKSNGDDIDVC-GILNLMTNEFFKLYLNE-EEDIYLYGFGFSRKTKRYKLFR----A

Query:  TTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGK--EKGKEFVIY
            ++    MEI  F   +G K+WRHF+ LPF     G YLNGVIYWIGK  EK  E VIY
Subjt:  TTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGK--EKGKEFVIY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATAGATTATGCTTCATCTTGTAAATTCGTTCCAAATGCTTTTTTTGTCTCTACCTACGATATATGTCCTCCCAATTGCAATCGTGTTTGTCGTACTCCTCGTTT
TTGCAATCCCAAGATGAATTGTATCGATATTGATAAGATGAATTTGGTTGCCTCATTTGGGTTTGACGAACGTGATTGCTCAATTATCTCAATTTTAAATTTCTGTAATG
GCTTGCTGTTTATTTCTAAAAGTAATGGTGACGACATTGATGTTTGTGGTATATTAAATCTGATGACTAATGAGTTTTTCAAACTTTACCTCAATGAAGAGGAGGATATT
TACCTATATGGATTTGGTTTTAGCCGTAAGACGAAGCGGTACAAATTGTTTAGAGCTACTACTGGTCAAGAAGAATACACTTGCACAATGGAGATTATGAGGTTCGGTGG
TAGGAGTGGAACCAAGGAATGGAGGCATTTTGACTGCCTCCCTTTTGACTTCCATTGTTGTGGTGCTTATTTGAATGGAGTCATCTATTGGATTGGAAAAGAGAAAGGAA
AAGAGTTTGTGATTTATTTGAATGGAGTCATCTATTGCCGGTATTCCCATCGTTGGACCATGTTGCAAGAAGTTTCAATTGTGGATGATGCAAGGAAAAGATTCATGGAT
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTATAGATTATGCTTCATCTTGTAAATTCGTTCCAAATGCTTTTTTTGTCTCTACCTACGATATATGTCCTCCCAATTGCAATCGTGTTTGTCGTACTCCTCGTTT
TTGCAATCCCAAGATGAATTGTATCGATATTGATAAGATGAATTTGGTTGCCTCATTTGGGTTTGACGAACGTGATTGCTCAATTATCTCAATTTTAAATTTCTGTAATG
GCTTGCTGTTTATTTCTAAAAGTAATGGTGACGACATTGATGTTTGTGGTATATTAAATCTGATGACTAATGAGTTTTTCAAACTTTACCTCAATGAAGAGGAGGATATT
TACCTATATGGATTTGGTTTTAGCCGTAAGACGAAGCGGTACAAATTGTTTAGAGCTACTACTGGTCAAGAAGAATACACTTGCACAATGGAGATTATGAGGTTCGGTGG
TAGGAGTGGAACCAAGGAATGGAGGCATTTTGACTGCCTCCCTTTTGACTTCCATTGTTGTGGTGCTTATTTGAATGGAGTCATCTATTGGATTGGAAAAGAGAAAGGAA
AAGAGTTTGTGATTTATTTGAATGGAGTCATCTATTGCCGGTATTCCCATCGTTGGACCATGTTGCAAGAAGTTTCAATTGTGGATGATGCAAGGAAAAGATTCATGGAT
TAG
Protein sequenceShow/hide protein sequence
MVIDYASSCKFVPNAFFVSTYDICPPNCNRVCRTPRFCNPKMNCIDIDKMNLVASFGFDERDCSIISILNFCNGLLFISKSNGDDIDVCGILNLMTNEFFKLYLNEEEDI
YLYGFGFSRKTKRYKLFRATTGQEEYTCTMEIMRFGGRSGTKEWRHFDCLPFDFHCCGAYLNGVIYWIGKEKGKEFVIYLNGVIYCRYSHRWTMLQEVSIVDDARKRFMD