; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10018360 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018360
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase II subunit 4
Genome locationChr04:3456237..3457393
RNA-Seq ExpressionHG10018360
SyntenyHG10018360
Gene Ontology termsGO:0000288 - nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0031990 - mRNA export from nucleus in response to heat stress (biological process)
GO:0034402 - recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex (biological process)
GO:0045948 - positive regulation of translational initiation (biological process)
GO:0000932 - P-body (cellular component)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0031369 - translation initiation factor binding (molecular function)
InterPro domainsIPR005574 - RNA polymerase subunit RPB4/RPC9
IPR006590 - RNA polymerase Rpb4/RPC9, core
IPR010997 - HRDC-like superfamily
IPR038324 - Rpb4/RPC9 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3479871.1 DNA-directed RNA polymerase II subunit RPB4 [Gossypium australe]1.1e-4492Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSLIKRFE
        MNCEV+LILEHKYEQLQQMS+DP NQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPS+KTKGR HDD+AIE+MLNDLSLIK+FE
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSLIKRFE
KAG6773620.1 hypothetical protein POTOM_020911 [Populus tomentosa]2.2e-4594Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSLIKRFE
        MNCEV+LILEHKYEQLQQMS+DP NQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPS+KTKGR HDDEAIEKMLNDLSLIK+FE
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSLIKRFE
KAG7033258.1 DNA-directed RNA polymerase II subunit 4 [Cucurbita argyrosperma subsp. argyrosperma]3.3e-4697Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSLIKRFE
        MNCEVSLILEHKYEQLQQMSEDP NQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPSLK KGRVHDDEAIEKMLNDLSLIK+FE
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSLIKRFE
XP_004138390.1 DNA-directed RNA polymerase II subunit 4 [Cucumis sativus]6.3e-4587.72Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
        MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI

Query:  EKMLNDLSLIKRFE
        EKMLNDLSLIKRFE
Subjt:  EKMLNDLSLIKRFE
XP_038884885.1 DNA-directed RNA polymerase II subunit 4 [Benincasa hispida]6.3e-4587.72Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
        MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI

Query:  EKMLNDLSLIKRFE
        EKMLNDLSLIKRFE
Subjt:  EKMLNDLSLIKRFE
TrEMBL top hitse value%identityAlignment
A0A0A0K7V5 RPOL4c domain-containing protein3.0e-4587.72Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
        MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI

Query:  EKMLNDLSLIKRFE
        EKMLNDLSLIKRFE
Subjt:  EKMLNDLSLIKRFE
A0A0B0NCZ0 DNA-directed RNA polymerase II subunit RPB45.2e-4592Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSLIKRFE
        MNCEV+LILEHKYEQLQQMS+DP NQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPS+KTKGR HDD+AIE+MLNDLSLIK+FE
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSLIKRFE
A0A0D2S1E3 RPOL4c domain-containing protein5.2e-4592Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSLIKRFE
        MNCEV+LILEHKYEQLQQMS+DP NQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPS+KTKGR HDD+AIE+MLNDLSLIK+FE
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSLIKRFE
A0A1S3C4R9 DNA-directed RNA polymerase II subunit 43.0e-4587.72Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
        MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI

Query:  EKMLNDLSLIKRFE
        EKMLNDLSLIKRFE
Subjt:  EKMLNDLSLIKRFE
A0A5D3C019 DNA-directed RNA polymerase II subunit 43.0e-4587.72Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
        MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI

Query:  EKMLNDLSLIKRFE
        EKMLNDLSLIKRFE
Subjt:  EKMLNDLSLIKRFE
SwissProt top hitse value%identityAlignment
O15514 DNA-directed RNA polymerase II subunit RPB47.3e-1235.96Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
        +N EV ++LEH+ +Q +  S +   ++S+VF K+L Y  RFSR+KN + +               +L  L NLCPET EE+ A++PSL  +GR  D+E +
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI

Query:  EKMLNDLSLIKRFE
        +++L+D+   + F+
Subjt:  EKMLNDLSLIKRFE
O48890 DNA-directed RNA polymerase II subunit 41.7e-4582.46Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
        MNCEVSLILEHK+EQLQQ+SEDP NQVSQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPETVEEA+AMVPSLKTKGR HDDEAI
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI

Query:  EKMLNDLSLIKRFE
        EKMLNDLSL+KRFE
Subjt:  EKMLNDLSLIKRFE
Q54S04 DNA-directed RNA polymerase II subunit rpb41.7e-0830.95Show/hide
Query:  MNCEVSLILEHK----------YEQ---LQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPS
        +N EV+++LEH+          + Q   L  +  +  N + + F K+L Y ++FSRYKN  +++Q              +  L NLCPE  +EA +++PS
Subjt:  MNCEVSLILEHK----------YEQ---LQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPS

Query:  LKTKGRVHDDEAIEKMLNDLSLIKRF
        LK   ++ DDE ++ +L++LS +++F
Subjt:  LKTKGRVHDDEAIEKMLNDLSLIKRF
Q6DBA5 DNA-directed RNA polymerases IV and V subunit 41.2e-0933.33Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
        M+CE   IL+    QL  +SEDP+ ++   ++++L YV+    Y NP +VR              ++CV+ N   E+V+E +A +PSLKTK  V  ++ +
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI

Query:  EKMLNDLSLIKRFE
        +  L +LS +K+ E
Subjt:  EKMLNDLSLIKRFE
Q9D7M8 DNA-directed RNA polymerase II subunit RPB47.3e-1235.96Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
        +N EV ++LEH+ +Q +  S +   ++S+VF K+L Y  RFSR+KN + +               +L  L NLCPET EE+ A++PSL  +GR  D+E +
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI

Query:  EKMLNDLSLIKRFE
        +++L+D+   + F+
Subjt:  EKMLNDLSLIKRFE
Arabidopsis top hitse value%identityAlignment
AT4G15950.1 RNA polymerase II, Rpb4, core protein8.2e-1133.33Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
        M+CE   IL+    QL  +SEDP+ ++   ++++L YV+    Y NP +VR              ++CV+ N   E+V+E +A +PSLKTK  V  ++ +
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVR--------------QLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI

Query:  EKMLNDLSLIKRFE
        +  L +LS +K+ E
Subjt:  EKMLNDLSLIKRFE
AT5G09920.1 RNA polymerase II, Rpb4, core protein1.2e-4682.46Show/hide
Query:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI
        MNCEVSLILEHK+EQLQQ+SEDP NQVSQVFEKSLQYVKRFSRYKNPDAVRQ              LCVLGNLCPETVEEA+AMVPSLKTKGR HDDEAI
Subjt:  MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQ--------------LCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAI

Query:  EKMLNDLSLIKRFE
        EKMLNDLSL+KRFE
Subjt:  EKMLNDLSLIKRFE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTGTGAAGTTTCTCTAATCCTTGAACATAAATATGAACAACTTCAACAAATGTCTGAGGATCCAACGAATCAAGTTTCCCAAGTGTTTGAAAAGTCACTACAATA
TGTGAAACGCTTCAGCCGTTATAAGAACCCTGATGCTGTTAGACAACTTTGTGTTCTGGGCAACCTTTGCCCTGAAACTGTAGAGGAAGCCATTGCTATGGTACCATCTT
TAAAGACTAAAGGAAGGGTGCATGACGATGAAGCAATCGAGAAGATGCTGAATGATCTTTCATTAATCAAAAGATTTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATTGTGAAGTTTCTCTAATCCTTGAACATAAATATGAACAACTTCAACAAATGTCTGAGGATCCAACGAATCAAGTTTCCCAAGTGTTTGAAAAGTCACTACAATA
TGTGAAACGCTTCAGCCGTTATAAGAACCCTGATGCTGTTAGACAACTTTGTGTTCTGGGCAACCTTTGCCCTGAAACTGTAGAGGAAGCCATTGCTATGGTACCATCTT
TAAAGACTAAAGGAAGGGTGCATGACGATGAAGCAATCGAGAAGATGCTGAATGATCTTTCATTAATCAAAAGATTTGAGTAG
Protein sequenceShow/hide protein sequence
MNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQYVKRFSRYKNPDAVRQLCVLGNLCPETVEEAIAMVPSLKTKGRVHDDEAIEKMLNDLSLIKRFE