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HG10018401 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018401
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationChr04:3822944..3823150
RNA-Seq ExpressionHG10018401
SyntenyHG10018401
Gene Ontology termsGO:0007166 - cell surface receptor signaling pathway (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602608.1 U-box domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]6.9e-1186.96Show/hide
Query:  QHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
        + LL+NP RSIPSLQSLAADGSLKARRKADALLR L RCCFQSQPC
Subjt:  QHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
XP_008441478.1 PREDICTED: U-box domain-containing protein 13-like [Cucumis melo]2.4e-1184Show/hide
Query:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
        E   + LLINP RSIPSLQSLAADGSLKARRKADALLR L RCCFQSQPC
Subjt:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
XP_022133679.1 U-box domain-containing protein 1-like [Momordica charantia]2.4e-1184Show/hide
Query:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
        E   + LLINP RSIPSLQSLAADGSLKARRKADALLR L RCCFQSQPC
Subjt:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
XP_022963960.1 U-box domain-containing protein 1-like [Cucurbita moschata]6.9e-1186.96Show/hide
Query:  QHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
        + LL+NP RSIPSLQSLAADGSLKARRKADALLR L RCCFQSQPC
Subjt:  QHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
XP_038884258.1 U-box domain-containing protein 1-like [Benincasa hispida]2.4e-1184Show/hide
Query:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
        E   + LLINP RSIPSLQSLAADGSLKARRKADALLR L RCCFQSQPC
Subjt:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
TrEMBL top hitse value%identityAlignment
A0A0A0K7R8 RING-type E3 ubiquitin transferase9.7e-1182Show/hide
Query:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
        E   + LLINP RSIPSLQSLAADGSLKARRKADALLR L RCC QSQPC
Subjt:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
A0A1S3B3K6 RING-type E3 ubiquitin transferase1.1e-1184Show/hide
Query:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
        E   + LLINP RSIPSLQSLAADGSLKARRKADALLR L RCCFQSQPC
Subjt:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
A0A5A7UIN1 RING-type E3 ubiquitin transferase1.1e-1184Show/hide
Query:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
        E   + LLINP RSIPSLQSLAADGSLKARRKADALLR L RCCFQSQPC
Subjt:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
A0A6J1BWP6 RING-type E3 ubiquitin transferase1.1e-1184Show/hide
Query:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
        E   + LLINP RSIPSLQSLAADGSLKARRKADALLR L RCCFQSQPC
Subjt:  ERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
A0A6J1HJG2 RING-type E3 ubiquitin transferase3.3e-1186.96Show/hide
Query:  QHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
        + LL+NP RSIPSLQSLAADGSLKARRKADALLR L RCCFQSQPC
Subjt:  QHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPC
SwissProt top hitse value%identityAlignment
E4NKF8 U-box domain-containing protein 13.0e-0985Show/hide
Query:  LLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQ
        LL NP RSIPSLQSLAADGSL+ARRKADALLR L RCC Q
Subjt:  LLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQ
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGAGGAAGTTGCAACATCTGCTGATAAATCCTCATCGTAGTATACCTTCTCTGCAAAGCTTAGCAGCAGATGGATCATTGAAGGCCAGAAGAAAGGCTGATGC
ATTGCTTAGACCGCTTACTAGGTGCTGCTTCCAGTCTCAGCCATGTCGAATAGCAGAAAAGGAGCTGCAGTTTCAGAGTGCTGTTTTTCTACAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGAGGAAGTTGCAACATCTGCTGATAAATCCTCATCGTAGTATACCTTCTCTGCAAAGCTTAGCAGCAGATGGATCATTGAAGGCCAGAAGAAAGGCTGATGC
ATTGCTTAGACCGCTTACTAGGTGCTGCTTCCAGTCTCAGCCATGTCGAATAGCAGAAAAGGAGCTGCAGTTTCAGAGTGCTGTTTTTCTACAATAA
Protein sequenceShow/hide protein sequence
MEERKLQHLLINPHRSIPSLQSLAADGSLKARRKADALLRPLTRCCFQSQPCRIAEKELQFQSAVFLQ