; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10018405 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018405
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr04:3853695..3858620
RNA-Seq ExpressionHG10018405
SyntenyHG10018405
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034016.1 hypothetical protein E6C27_scaffold400G00850 [Cucumis melo var. makuwa]1.5e-0935.19Show/hide
Query:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPEQANPIKSDEKTTHEQEVRDRKGK--KK
        NY GF+PA + I D  G ++ +  +T + GKW+  ++ ++HG+FKR+AA +F   +P SE +LF G  A  P+  N      K+T  ++    K    K 
Subjt:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPEQANPIKSDEKTTHEQEVRDRKGK--KK

Query:  LEDWQSPT
          D  SPT
Subjt:  LEDWQSPT

KAA0056838.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.1e-1042.47Show/hide
Query:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPE
        NY GF+PASI I D  G+ + +TTV PA  +W+  ++ ++HGSF+ +AA  F   + ++E+Y ++G  A PPE
Subjt:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPE

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.1e-1042.47Show/hide
Query:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPE
        NY GF+PASI I D  G+ + +TTV PA  +W+  ++ ++HGSF+ +AA  F   + ++E+Y ++G  A PPE
Subjt:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPE

KAA0063660.1 hypothetical protein E6C27_scaffold329G001750 [Cucumis melo var. makuwa]1.2e-0936.11Show/hide
Query:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPEQANPIKSDEKTTHEQEVRDRKGK--KK
        NY GF+PA + I D  G ++ I T+T + GKW+  ++ ++HG+FKR+AA +F   +P SE +LF G  A  P+  N      K+   ++    K    K 
Subjt:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPEQANPIKSDEKTTHEQEVRDRKGK--KK

Query:  LEDWQSPT
          D  SPT
Subjt:  LEDWQSPT

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.1e-1042.47Show/hide
Query:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPE
        NY GF+PASI I D  G+ + +TTV PA  +W+  ++ ++HGSF+ +AA  F   + ++E+Y ++G  A PPE
Subjt:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPE

TrEMBL top hitse value%identityAlignment
A0A5A7SVM5 DUF4283 domain-containing protein7.5e-1035.19Show/hide
Query:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPEQANPIKSDEKTTHEQEVRDRKGK--KK
        NY GF+PA + I D  G ++ +  +T + GKW+  ++ ++HG+FKR+AA +F   +P SE +LF G  A  P+  N      K+T  ++    K    K 
Subjt:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPEQANPIKSDEKTTHEQEVRDRKGK--KK

Query:  LEDWQSPT
          D  SPT
Subjt:  LEDWQSPT

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein4.4e-1042.47Show/hide
Query:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPE
        NY GF+PASI I D  G+ + +TTV PA  +W+  ++ ++HGSF+ +AA  F   + ++E+Y ++G  A PPE
Subjt:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPE

A0A5A7V8Z8 Uncharacterized protein5.7e-1036.11Show/hide
Query:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPEQANPIKSDEKTTHEQEVRDRKGK--KK
        NY GF+PA + I D  G ++ I T+T + GKW+  ++ ++HG+FKR+AA +F   +P SE +LF G  A  P+  N      K+   ++    K    K 
Subjt:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPEQANPIKSDEKTTHEQEVRDRKGK--KK

Query:  LEDWQSPT
          D  SPT
Subjt:  LEDWQSPT

A0A5D3BKT8 LINE-1 retrotransposable element ORF2 protein4.4e-1042.47Show/hide
Query:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPE
        NY GF+PASI I D  G+ + +TTV PA  +W+  ++ ++HGSF+ +AA  F   + ++E+Y ++G  A PPE
Subjt:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPE

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein4.4e-1042.47Show/hide
Query:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPE
        NY GF+PASI I D  G+ + +TTV PA  +W+  ++ ++HGSF+ +AA  F   + ++E+Y ++G  A PPE
Subjt:  NYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGTAAATTACTGTGGTTTTATTCCCGCTTCGATTGGCATTAGAGATGGGAACGGGAAGGAATATACGATTACCACTGTTACTCCGGCGAACGGAAAATGGGTTAC
TGGAAAACATGCGAAAATCCATGGGTCCTTTAAACGAGAAGCAGCTGTCAATTTCAAACCAGATGACCCCATGTCAGAAAGCTACCTATTCCATGGAGCAGTTGCCAGGC
CGCCAGAGCAAGCAAACCCTATAAAATCAGACGAGAAGACCACACATGAACAGGAAGTGAGAGACAGGAAAGGCAAAAAGAAATTAGAAGATTGGCAGAGTCCCACCGTC
AGAGTAATTCCTCCCCAATTGCCGAAGCCTCAAAAGCTGAAAAAGTATACTCAACCTCATCACCACCGATGCCTCATTGCTCGACTTCAACGACCACCTCTGACGACCAA
TTCCATTGACTACCTCCGATGGCCAACTCGACGACCACCTTTGATGGCCAACTCTGTCAACCACTATCTACAGCCAACTCTAGTAACATCCAACCACCACTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGTAAATTACTGTGGTTTTATTCCCGCTTCGATTGGCATTAGAGATGGGAACGGGAAGGAATATACGATTACCACTGTTACTCCGGCGAACGGAAAATGGGTTAC
TGGAAAACATGCGAAAATCCATGGGTCCTTTAAACGAGAAGCAGCTGTCAATTTCAAACCAGATGACCCCATGTCAGAAAGCTACCTATTCCATGGAGCAGTTGCCAGGC
CGCCAGAGCAAGCAAACCCTATAAAATCAGACGAGAAGACCACACATGAACAGGAAGTGAGAGACAGGAAAGGCAAAAAGAAATTAGAAGATTGGCAGAGTCCCACCGTC
AGAGTAATTCCTCCCCAATTGCCGAAGCCTCAAAAGCTGAAAAAGTATACTCAACCTCATCACCACCGATGCCTCATTGCTCGACTTCAACGACCACCTCTGACGACCAA
TTCCATTGACTACCTCCGATGGCCAACTCGACGACCACCTTTGATGGCCAACTCTGTCAACCACTATCTACAGCCAACTCTAGTAACATCCAACCACCACTATTGA
Protein sequenceShow/hide protein sequence
MMVNYCGFIPASIGIRDGNGKEYTITTVTPANGKWVTGKHAKIHGSFKREAAVNFKPDDPMSESYLFHGAVARPPEQANPIKSDEKTTHEQEVRDRKGKKKLEDWQSPTV
RVIPPQLPKPQKLKKYTQPHHHRCLIARLQRPPLTTNSIDYLRWPTRRPPLMANSVNHYLQPTLVTSNHHY