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HG10018478 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018478
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionActin-related protein 2/3 complex subunit 5
Genome locationChr04:4570716..4575755
RNA-Seq ExpressionHG10018478
SyntenyHG10018478
Gene Ontology termsGO:0030833 - regulation of actin filament polymerization (biological process)
GO:0034314 - Arp2/3 complex-mediated actin nucleation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005885 - Arp2/3 protein complex (cellular component)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR006789 - Actin-related protein 2/3 complex subunit 5
IPR036743 - Actin-related protein 2/3 complex subunit 5 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056599.1 actin-related protein 2/3 complex subunit 5A [Cucumis melo var. makuwa]1.5e-3996.67Show/hide
Query:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MAT  EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
XP_008441367.1 PREDICTED: actin-related protein 2/3 complex subunit 5A [Cucumis melo]1.5e-3996.67Show/hide
Query:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MAT  EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
XP_022133485.1 actin-related protein 2/3 complex subunit 5A [Momordica charantia]3.3e-3995.56Show/hide
Query:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MA   EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWI VHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
XP_022989957.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima]3.3e-3992.39Show/hide
Query:  FVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMNNFGYILR
        FVEADNAEAIITRIEHKSRKIESLLKQS+ VEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMN + Y+ R
Subjt:  FVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMNNFGYILR
XP_038884940.1 actin-related protein 2/3 complex subunit 5A [Benincasa hispida]6.0e-4198.89Show/hide
Query:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MAT GEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
TrEMBL top hitse value%identityAlignment
A0A1S3B407 Actin-related protein 2/3 complex subunit 57.2e-4096.67Show/hide
Query:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MAT  EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
A0A5A7USU9 Actin-related protein 2/3 complex subunit 57.2e-4096.67Show/hide
Query:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MAT  EFVEADNAEAIITRIEHKSRKIESLLKQS+PVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
A0A6J1BVD6 Actin-related protein 2/3 complex subunit 51.6e-3995.56Show/hide
Query:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MA   EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWI VHRALMAIKDVDGMFSSLDPEYYDILM
Subjt:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
A0A6J1JH92 Actin-related protein 2/3 complex subunit 51.6e-3992.39Show/hide
Query:  FVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMNNFGYILR
        FVEADNAEAIITRIEHKSRKIESLLKQS+ VEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMN + Y+ R
Subjt:  FVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMNNFGYILR
A0A6P4A354 Actin-related protein 2/3 complex subunit 53.6e-3994.44Show/hide
Query:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MA  GEFVEADNAEAIITRIEHKSRKIESLLKQ +PVEALKTALEGSPPNTRDERCKSANWIVVHRA+MAIKDVDGMFSSLDPEYYDILM
Subjt:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
SwissProt top hitse value%identityAlignment
B3H6Y2 Actin-related protein 2/3 complex subunit 5B2.2e-3074.44Show/hide
Query:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MA    FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSANWIVVHRA+MAIKD++GM +SL  EYYDILM
Subjt:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Q9M117 Actin-related protein 2/3 complex subunit 5A1.9e-3487.06Show/hide
Query:  EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        EFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWIVVHRALMAIKD+DGM ++LD EYYDILM
Subjt:  EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
Arabidopsis top hitse value%identityAlignment
AT4G01710.1 ARP2/3 complex 16 kDa subunit (p16-Arc)1.4e-3587.06Show/hide
Query:  EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        EFVEADNAEAII RIE KSRKIESLLKQ + VEALKTALEGSPP TRDERCKSANWIVVHRALMAIKD+DGM ++LD EYYDILM
Subjt:  EFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
AT5G65274.1 ARP2/3 complex 16 kDa subunit (p16-Arc)1.6e-3174.44Show/hide
Query:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM
        MA    FVEADNAE I+ RIE KS+KIESLLK  + VEALKTAL+GSPP T DERCKSANWIVVHRA+MAIKD++GM +SL  EYYDILM
Subjt:  MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACTAAAGGTGAATTTGTGGAAGCAGATAATGCCGAAGCCATAATCACCAGAATCGAGCACAAATCTCGAAAGATCGAGAGTTTACTTAAACAGTCTAGACCAGT
TGAAGCTCTTAAAACTGCTCTCGAAGGTTCTCCTCCAAATACCCGAGATGAGCGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATG
TAGATGGGATGTTCTCTTCGTTGGATCCAGAGTACTATGATATTCTGATGAACAACTTCGGCTACATACTCCGACAACCACCTTCGCGCGACCAACTCCAGGCTTTGGCA
ACCACCTCTGACGGCAACTCCGACGACTACCTTCGGCAAGCAACTCCAGGCTTCGGCAACCATTTCCAACAACTCCGACGACCACCTTCACACAAAAAGCCACTCCGACG
ACATACTCTGACTACCACGTTCAGGCGACCAACTTTGATGACCAACTCGGGGTTCTGGCAACCACCTTCGACGATAACTTCAGCGAAGATCACCCCAAATACAGAGACCC
CAACTCATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACTAAAGGTGAATTTGTGGAAGCAGATAATGCCGAAGCCATAATCACCAGAATCGAGCACAAATCTCGAAAGATCGAGAGTTTACTTAAACAGTCTAGACCAGT
TGAAGCTCTTAAAACTGCTCTCGAAGGTTCTCCTCCAAATACCCGAGATGAGCGCTGCAAGTCAGCAAATTGGATTGTGGTGCATAGGGCTCTCATGGCTATAAAGGATG
TAGATGGGATGTTCTCTTCGTTGGATCCAGAGTACTATGATATTCTGATGAACAACTTCGGCTACATACTCCGACAACCACCTTCGCGCGACCAACTCCAGGCTTTGGCA
ACCACCTCTGACGGCAACTCCGACGACTACCTTCGGCAAGCAACTCCAGGCTTCGGCAACCATTTCCAACAACTCCGACGACCACCTTCACACAAAAAGCCACTCCGACG
ACATACTCTGACTACCACGTTCAGGCGACCAACTTTGATGACCAACTCGGGGTTCTGGCAACCACCTTCGACGATAACTTCAGCGAAGATCACCCCAAATACAGAGACCC
CAACTCATGATTGA
Protein sequenceShow/hide protein sequence
MATKGEFVEADNAEAIITRIEHKSRKIESLLKQSRPVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMNNFGYILRQPPSRDQLQALA
TTSDGNSDDYLRQATPGFGNHFQQLRRPPSHKKPLRRHTLTTTFRRPTLMTNSGFWQPPSTITSAKITPNTETPTHD