CuGenDBv2

Gene ID	HG10018605
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribulose bisphosphate carboxylase large chain
Genome location	Chr04:5759685..5761637
RNA-Seq Expression	HG10018605
Synteny	HG10018605
Gene Ontology terms	GO:0009853 - photorespiration (biological process) GO:0019253 - reductive pentose-phosphate cycle (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domains	IPR017443 - Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal IPR033966 - RuBisCO IPR036422 - RuBisCO large subunit, N-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ACB29074.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hesperomannia arbuscula]

4.2e-35

97.37

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE KNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

CAJ86723.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Athanasia trifurcata]

1.6e-34

96.05

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

QBP45558.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Solidago ptarmicoides]

1.2e-34

92.5

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Query:  HLLISPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        HLL S EYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEE+Q+IAYV
Subjt:  HLLISPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

XP_042755668.1 ribulose bisphosphate carboxylase large chain-like [Lactuca sativa]

1.6e-34

96.05

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

XP_042756606.1 ribulose bisphosphate carboxylase large chain [Lactuca sativa]

1.6e-34

96.05

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

TrEMBL top hits

e value

%identity

Alignment

A0A345EZG6 Ribulose bisphosphate carboxylase large chain (Fragment)

7.8e-35

96.05

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

A0A3G1M608 Ribulose bisphosphate carboxylase large chain (Fragment)

7.8e-35

96.05

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

A0A482K6T7 Ribulose bisphosphate carboxylase large chain (Fragment)

6.0e-35

92.5

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Query:  HLLISPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        HLL S EYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEE+Q+IAYV
Subjt:  HLLISPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

B2Y4U6 Ribulose bisphosphate carboxylase large chain

2.1e-35

97.37

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE KNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

E9NFR8 Ribulose-bisphosphate carboxylase (Fragment)

7.8e-35

96.05

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

SwissProt top hits

e value

%identity

Alignment

P36478 Ribulose bisphosphate carboxylase large chain (Fragment)

2.1e-37

96.05

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

P48693 Ribulose bisphosphate carboxylase large chain

2.1e-37

96.05

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

P48697 Ribulose bisphosphate carboxylase large chain (Fragment)

2.1e-37

96.05

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

P48706 Ribulose bisphosphate carboxylase large chain

2.1e-37

96.05

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

Q37192 Ribulose bisphosphate carboxylase large chain

4.7e-37

94.74

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Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGE+NQYIAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00490.1 ribulose-bisphosphate carboxylases

1.8e-36

92.11

Show/hide

Query:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV
        +PEYE K+TDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCY IEPVPGEE Q+IAYV
Subjt:  SPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIAYV

Sequences

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CDS sequence

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ATGCTTACTCACATACGTGTCATTGAGAGCTTTCTTGTTCTTATAAGTGGGAGTTATGGCCAAAATTCAATTGAATTGAGACATCTTTTAATTTCTCCTGAATAT
GAAAACAAAAATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAACCGGGAGTTCCACCTGAGGAAGCAGGGGCCGCCGTAGCTGCTGAATCTTCTACTGGT
ACATGGACAACTGTGTGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCGAGCCTGTTCCTGGAGAAGAAAATCAATATATTGCT
TATGTAACTTTAACTTTTGTAGTTGCCAAATGTTTTATCTACAAATGGAAATTATAA

mRNA sequence

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Protein sequence

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MLTHIRVIESFLVLISGSYGQNSIELRHLLISPEYENKNTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIEPVPGEENQYIA
YVTLTFVVAKCFIYKWKL

HG10018605 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome