; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10018682 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018682
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSWIB domain-containing protein
Genome locationChr04:6820466..6822410
RNA-Seq ExpressionHG10018682
SyntenyHG10018682
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571933.1 hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sororia]1.9e-6087.68Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGEPSLLVA+AS + SSVK+PYQL LPNLRF+RT+TFASASNQ TAS RQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+I+CDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

XP_022952608.1 uncharacterized protein LOC111455244 [Cucurbita moschata]8.6e-6188.41Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGEPSLLVA+AS + SSVK+PYQL LPNLRF+RT+TFASASNQ TAS RQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+IICDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

XP_022972543.1 uncharacterized protein LOC111471082 [Cucurbita maxima]3.3e-6088.41Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGE SLL+A+AS + SSVK+PYQL LPNLRF+RT+TFASASNQATAS RQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+I+CDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

XP_023553864.1 uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]8.6e-6188.41Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGEPSLLVA+AS + SSVK+PYQL LPNLRF+RT+TFASASNQ TAS RQPRGIMKPRRISPEMQALVGAPEISRTQALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KP+DKK+IICDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

XP_038888173.1 uncharacterized protein LOC120078055 isoform X1 [Benincasa hispida]4.1e-6393.48Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAF+STFISGEPSLLV KAS   +SVK PYQL LPNLRFARTVTFASASNQATAS RQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

TrEMBL top hitse value%identityAlignment
A0A1S3C0N2 SWI/SNF complex component SNF12 homolog2.5e-5380.42Show/hide
Query:  MAFVSTFISGEPSLLVAKASPIT-----SSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIK
        MAF+STFI+ +PSLLV K SP T     SS+K+  QL LP+LRF RTVTFA ASNQATA RR+PRGI KPR+ISPE+QALVGAPEISRTQALKVIWA+IK
Subjt:  MAFVSTFISGEPSLLVAKASPIT-----SSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIK

Query:  EHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        E+NLQKPSDKKVI+CDEKLKNIFGGKDEVGFLEIAGLISPHFL
Subjt:  EHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

A0A6J1EIX1 uncharacterized protein LOC1114346993.3e-5887.68Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTFISGE SLL  +AS   SSVK+PYQ    NL FARTVTFAS SNQATAS+RQPRGIMKP+RISPEMQALVG PEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

A0A6J1GL33 uncharacterized protein LOC1114552444.2e-6188.41Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGEPSLLVA+AS + SSVK+PYQL LPNLRF+RT+TFASASNQ TAS RQPRGIMKPRRISPEMQALVGAPEISRT+ALKVIW HIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+IICDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

A0A6J1IAA1 uncharacterized protein LOC1114710821.6e-6088.41Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTF+SGE SLL+A+AS + SSVK+PYQL LPNLRF+RT+TFASASNQATAS RQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKK+I+CDEKLK IFGGKDEVGFLEIAGLIS HFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

A0A6J1JNZ3 uncharacterized protein LOC1114861971.9e-5887.68Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ
        MAFVSTFISGE SLL  +AS  +SSVK+PYQ    NL FARTVTFAS SNQATAS+RQPRGIMKP+RISPEMQALVG PEISRTQALKVIWAHIKEHNLQ
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQ

Query:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
Subjt:  KPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp275.5e-1045.45Show/hide
Query:  KPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF
        KP ++SP++   +G  ++SR Q +K +W +IK H+LQ P+DK+ I+CD+KLK++F
Subjt:  KPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIF

Q05024 Protein TRI12.7e-0929.51Show/hide
Query:  ISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRG--------IMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNL
        I   P +L+ K   I+   +   +L     R  R+       +++ + R++ +          ++   +S  +Q  +G+ E+ RTQ +K+IW +IKEH+L
Subjt:  ISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRG--------IMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNL

Query:  QKPSDKKVIICDEKLKNIFGGK
        Q P D++ I+CDEK++ IFG K
Subjt:  QKPSDKKVIICDEKLKNIFGGK

Q08747 Upstream activation factor subunit UAF301.8e-0848.08Show/hide
Query:  ISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFG
        +S  + +L+G  E++RT+ ++ +WA+IK HNLQ P++KK I+CDEKL+ I G
Subjt:  ISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFG

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein3.9e-1945.36Show/hide
Query:  RTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF
        RT+   +A+ +A     + +GI K R +S ++ +  G  E++R  ALK +W ++K HNLQ P++KK I CD+KLK IF GKD+VG  EI  L+SPHF
Subjt:  RTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF

AT2G14880.1 SWIB/MDM2 domain superfamily protein6.9e-3259.06Show/hide
Query:  TSSVKNPYQLSLPNLRFA----------RTVTFASASNQATA-SRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICD
        T+S +NP    L +LRFA          R VT A+ S++ TA ++R PRGIMKPR +SPEMQ +V  PEI+RTQALK IWA+IKEH+LQ P +K+ I+CD
Subjt:  TSSVKNPYQLSLPNLRFA----------RTVTFASASNQATA-SRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICD

Query:  EKLKNIFGGKDEVGFLEIAGLISPHFL
        EKLK IF G+D VGFLEIA LI PHFL
Subjt:  EKLKNIFGGKDEVGFLEIAGLISPHFL

AT2G35605.1 SWIB/MDM2 domain superfamily protein8.7e-1947.42Show/hide
Query:  RTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF
        R +   +AS+    + RQ  GI+K   +S  +   +G  E+SRT A+K IW +IK +NLQ P +K+ I+CDE+LK IF GKD VGFLEI+ L+S HF
Subjt:  RTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHF

AT3G03590.1 SWIB/MDM2 domain superfamily protein3.5e-2040Show/hide
Query:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPR--GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHN
        M+ V+  +      L+A AS  TSS+ +      P  +          +   + +++ PR  GI K   +SP +   +G  E SRT A+K IW +IK H+
Subjt:  MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPR--GIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHN

Query:  LQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        LQ P+DK+ I CDE LK IF GKD+VGFLEI+ L+SPHF+
Subjt:  LQKPSDKKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL

AT4G34290.1 SWIB/MDM2 domain superfamily protein5.3e-3255.22Show/hide
Query:  SLLVAKASPITSSVKNPYQLSL-----PNLRFARTVTFASASNQ---ATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSD
        + L    +P+ SS+ +P  L L      NLR  R VT A+A++     T   R+PRGIMKPR +S  MQ +VG PEI RTQALK IWA+IKEH+LQ P +
Subjt:  SLLVAKASPITSSVKNPYQLSL-----PNLRFARTVTFASASNQ---ATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSD

Query:  KKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL
        K+ I+CDEKLK IF GK+ VGFLEIA LI PHFL
Subjt:  KKVIICDEKLKNIFGGKDEVGFLEIAGLISPHFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCGTCTCCACCTTCATCTCCGGCGAACCGTCGCTCCTCGTCGCCAAAGCCTCCCCCATCACCTCCTCCGTCAAGAATCCTTATCAACTCTCTCTGCCTAATTT
GCGTTTCGCCCGCACCGTTACCTTCGCTTCCGCCTCCAACCAAGCCACTGCCTCCCGCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGAATTTCACCGGAGATGCAGG
CGCTTGTTGGCGCTCCTGAGATTTCCCGTACCCAAGCCCTTAAGGTCATTTGGGCTCACATTAAAGAGCATAATCTTCAGAAACCTAGCGACAAGAAAGTCATAATTTGC
GACGAGAAGCTGAAGAATATATTTGGAGGGAAAGATGAAGTTGGATTTCTGGAGATTGCAGGGTTAATAAGTCCACACTTTCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTCGTCTCCACCTTCATCTCCGGCGAACCGTCGCTCCTCGTCGCCAAAGCCTCCCCCATCACCTCCTCCGTCAAGAATCCTTATCAACTCTCTCTGCCTAATTT
GCGTTTCGCCCGCACCGTTACCTTCGCTTCCGCCTCCAACCAAGCCACTGCCTCCCGCCGGCAGCCCCGTGGCATCATGAAGCCCCGGAGAATTTCACCGGAGATGCAGG
CGCTTGTTGGCGCTCCTGAGATTTCCCGTACCCAAGCCCTTAAGGTCATTTGGGCTCACATTAAAGAGCATAATCTTCAGAAACCTAGCGACAAGAAAGTCATAATTTGC
GACGAGAAGCTGAAGAATATATTTGGAGGGAAAGATGAAGTTGGATTTCTGGAGATTGCAGGGTTAATAAGTCCACACTTTCTATAA
Protein sequenceShow/hide protein sequence
MAFVSTFISGEPSLLVAKASPITSSVKNPYQLSLPNLRFARTVTFASASNQATASRRQPRGIMKPRRISPEMQALVGAPEISRTQALKVIWAHIKEHNLQKPSDKKVIIC
DEKLKNIFGGKDEVGFLEIAGLISPHFL