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HG10018699 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018699
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSWIM-type domain-containing protein
Genome locationChr04:7057271..7058244
RNA-Seq ExpressionHG10018699
SyntenyHG10018699
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7126704.1 hypothetical protein RHSIM_Rhsim11G0188900 [Rhododendron simsii]2.6e-0734.04Show/hide
Query:  LNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWY-----EGVDGSFNILDSDKTSMELASLGVLNRNASINVYVEH
        +++GG   ++P RYV G+    + +D D WS L++ ++V +LGY++W+N+WY     E   G   ++  D  +M++AS        +I VYVEH
Subjt:  LNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWY-----EGVDGSFNILDSDKTSMELASLGVLNRNASINVYVEH

KAF7137171.1 hypothetical protein RHSIM_Rhsim07G0243000 [Rhododendron simsii]1.3e-0629.09Show/hide
Query:  FSIILNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWYE----GVDGSFNILDSDKTSMELASLGVLNRNASINVYVEHVGN
        F++ +++ G+  ++P RYV G+    D  D DLWS L++ D+V+ LGY +++ LWY     G++    +++++     +  + V+  +  I +Y+EHV +
Subjt:  FSIILNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWYE----GVDGSFNILDSDKTSMELASLGVLNRNASINVYVEHVGN

Query:  D---DVNTMP
        +   + N MP
Subjt:  D---DVNTMP

KAF7138770.1 hypothetical protein RHSIM_Rhsim07G0242400 [Rhododendron simsii]1.3e-0629.09Show/hide
Query:  FSIILNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWYE----GVDGSFNILDSDKTSMELASLGVLNRNASINVYVEHVGN
        F++ +++ G+  ++P RYV G+    D  D DLWS L++ D+V+ LGY +++ LWY     G++    +++++     +  + V+  +  I +Y+EHV +
Subjt:  FSIILNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWYE----GVDGSFNILDSDKTSMELASLGVLNRNASINVYVEHVGN

Query:  D---DVNTMP
        +   + N MP
Subjt:  D---DVNTMP

KAG5541483.1 hypothetical protein RHGRI_021341 [Rhododendron griersonianum]2.0e-0732.65Show/hide
Query:  FSIILNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWY-----EGVDGSFNILDSDKTSMELASLGVLNRNASINVYVEH
        F++ +++GG   ++P RYV G+    + +D D WS L++ +++ +LGY++W+N+WY     E   G   ++  D  +M++AS        +I VYVEH
Subjt:  FSIILNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWY-----EGVDGSFNILDSDKTSMELASLGVLNRNASINVYVEH

RYR55723.1 hypothetical protein Ahy_A06g030902 [Arachis hypogaea]3.8e-0634.58Show/hide
Query:  GRMEEFSIILNYGGKV--EKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWEN---LWYE----GVDGSFNILDSDKTSMELASLGVLNRNAS
        GRM++FS+ +++ G+   +K  + Y+ G   T D  D D WS+++ +D+V+ LGY   EN   LWY+    G++G   +L  D+ +ME+A++GV      
Subjt:  GRMEEFSIILNYGGKV--EKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWEN---LWYE----GVDGSFNILDSDKTSMELASLGVLNRNAS

Query:  INVYVEH
        +++YV H
Subjt:  INVYVEH

TrEMBL top hitse value%identityAlignment
A0A2N9FZN2 SPOC domain-containing protein2.6e-0529.17Show/hide
Query:  FSIILNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWYE--GV---DGSFNILDSDKTSMELASLGVLNRNASINVYVEHVG
        FS++L +G     +   Y G +K  FDK D + WS +++ ++V++LGY+    LWY   G+   DG  ++++SD  +M +  L  +     I V+VEH+ 
Subjt:  FSIILNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWYE--GV---DGSFNILDSDKTSMELASLGVLNRNASINVYVEHVG

Query:  NDDVNTMPIHDDEVRLGNDI
         + V    + D +     D+
Subjt:  NDDVNTMPIHDDEVRLGNDI

A0A3Q0F855 uncharacterized protein LOC1112420131.2e-0534.58Show/hide
Query:  EEFSIILNYGGK-VEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWYEGVDGSFNILDSDKTSMELASLGVLNRNASINVYVEHVGND
        E F++++++GG  V + P  YVGG K T+  +D D WS  +  D+VK LGY    +++Y   D     L+ DK++M +  +G++ R   + +YV H G D
Subjt:  EEFSIILNYGGK-VEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWYEGVDGSFNILDSDKTSMELASLGVLNRNASINVYVEHVGND

Query:  DVNTMPI
        D   + I
Subjt:  DVNTMPI

A0A445CXL7 SWIM-type domain-containing protein1.8e-0634.58Show/hide
Query:  GRMEEFSIILNYGGKV--EKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWEN---LWYE----GVDGSFNILDSDKTSMELASLGVLNRNAS
        GRM++FS+ +++ G+   +K  + Y+ G   T D  D D WS+++ +D+V+ LGY   EN   LWY+    G++G   +L  D+ +ME+A++GV      
Subjt:  GRMEEFSIILNYGGKV--EKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWEN---LWYE----GVDGSFNILDSDKTSMELASLGVLNRNAS

Query:  INVYVEH
        +++YV H
Subjt:  INVYVEH

A0A6A4LGM1 DBD_Tnp_Mut domain-containing protein (Fragment)3.1e-0628.69Show/hide
Query:  FSIILNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWY-----EGVDGSFNILDSDKTSMELASLG------VLNRNASINV
        F++ +++GG   ++P RYV G+    + +D D WS L++ ++V +LGY++W+N+WY     E   G   ++  D  +M++AS        + + +    V
Subjt:  FSIILNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWY-----EGVDGSFNILDSDKTSMELASLG------VLNRNASINV

Query:  YVEHVGNDDVNT---MPIHDDE
        Y     NDD      +PI +D+
Subjt:  YVEHVGNDDVNT---MPIHDDE

A0A6A4M1H5 DBD_Tnp_Mut domain-containing protein (Fragment)1.2e-0532.35Show/hide
Query:  GKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWYE----GVDGSFNILDSDKTSMELASLGVLNRNASINVYVEHVGND---DVNT
        G+  ++P RYV G+    D  D DLWS L++ D+V+ LGY  ++ LWY     G++    ++ +DK +M +    V+  +  I ++VEH  ++   + N 
Subjt:  GKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWYE----GVDGSFNILDSDKTSMELASLGVLNRNASINVYVEHVGND---DVNT

Query:  MP
        MP
Subjt:  MP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGATTTTGTTGAAGAAGACATCTCTAAGAATTCATTGGTTGGAGATTTCATCCTTGAAGAATTCACTGTTGAAGGGAGAATGGAAGAATTTAGTATAATTCTAAA
CTATGGTGGCAAAGTAGAAAAGAGTCCAGACAGATATGTAGGAGGTTTGAAATTGACTTTTGATAAAATTGACCTTGACTTGTGGTCTTTGTTGAAATTGTTTGACTTAG
TTAAGTCCTTAGGGTATAGTGAATGGGAAAATTTGTGGTATGAAGGTGTTGATGGCTCCTTTAATATATTAGACTCAGATAAAACATCAATGGAATTGGCTTCTTTAGGT
GTATTAAATAGAAATGCATCTATAAATGTATATGTAGAACATGTAGGGAATGACGATGTTAATACAATGCCTATACATGACGATGAAGTTAGACTTGGGAATGATATTTA
A
mRNA sequenceShow/hide mRNA sequence
ATGATAGATTTTGTTGAAGAAGACATCTCTAAGAATTCATTGGTTGGAGATTTCATCCTTGAAGAATTCACTGTTGAAGGGAGAATGGAAGAATTTAGTATAATTCTAAA
CTATGGTGGCAAAGTAGAAAAGAGTCCAGACAGATATGTAGGAGGTTTGAAATTGACTTTTGATAAAATTGACCTTGACTTGTGGTCTTTGTTGAAATTGTTTGACTTAG
TTAAGTCCTTAGGGTATAGTGAATGGGAAAATTTGTGGTATGAAGGTGTTGATGGCTCCTTTAATATATTAGACTCAGATAAAACATCAATGGAATTGGCTTCTTTAGGT
GTATTAAATAGAAATGCATCTATAAATGTATATGTAGAACATGTAGGGAATGACGATGTTAATACAATGCCTATACATGACGATGAAGTTAGACTTGGGAATGATATTTA
A
Protein sequenceShow/hide protein sequence
MIDFVEEDISKNSLVGDFILEEFTVEGRMEEFSIILNYGGKVEKSPDRYVGGLKLTFDKIDLDLWSLLKLFDLVKSLGYSEWENLWYEGVDGSFNILDSDKTSMELASLG
VLNRNASINVYVEHVGNDDVNTMPIHDDEVRLGNDI