; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10018711 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018711
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description50S ribosomal protein L27-like
Genome locationChr04:7300255..7300902
RNA-Seq ExpressionHG10018711
SyntenyHG10018711
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016651 - oxidoreductase activity, acting on NAD(P)H (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR001684 - Ribosomal protein L27
IPR018261 - Ribosomal protein L27, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583414.1 hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sororia]2.1e-7392.57Show/hide
Query:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATT CKRLNV++LVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        FALKEGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYA T  SPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

XP_016901663.1 PREDICTED: 50S ribosomal protein L27-like [Cucumis melo]2.8e-7393.2Show/hide
Query:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATT CKRLNV++LVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT
        FALKEG VKFEKHKLSGRKWVHVIPK+GHVLHPVYA TSTSP+LKTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT

XP_022964702.1 uncharacterized protein LOC111464705 [Cucurbita moschata]2.1e-7392.57Show/hide
Query:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATT CKRLNV++LVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        FALKEGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYA T  SPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

XP_022970580.1 uncharacterized protein LOC111469515 [Cucurbita maxima]1.2e-7393.84Show/hide
Query:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATT CKRLNV++LVTNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKT
        FALKEGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYA T  SPELKT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKT

XP_038877023.1 50S ribosomal protein L27-like [Benincasa hispida]2.5e-7493.24Show/hide
Query:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATT CKRLNV++LVT VPVYSSFSDGAA GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTL
Subjt:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        FALKEGCV FEKHKLSGRKWVHVIPKEGHVLHP+YA TSTSPELKTTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

TrEMBL top hitse value%identityAlignment
A0A1S4E0A6 50S ribosomal protein L27-like1.3e-7393.2Show/hide
Query:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATT CKRLNV++LVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT
        FALKEG VKFEKHKLSGRKWVHVIPK+GHVLHPVYA TSTSP+LKTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT

A0A5A7TXR2 50S ribosomal protein L27-like1.3e-7393.2Show/hide
Query:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATT CKRLNV++LVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT
        FALKEG VKFEKHKLSGRKWVHVIPK+GHVLHPVYA TSTSP+LKTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT

A0A6J1DS22 uncharacterized protein LOC1110238671.9e-7293.2Show/hide
Query:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIAT  CKRLNV++LVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGIGKDHTL
Subjt:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT
        FALKEGC+KFEKHKLSGRKWVHVIPKEGHVLHPVYA  ST+ ELKTT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTT

A0A6J1HP14 uncharacterized protein LOC1114647051.0e-7392.57Show/hide
Query:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATT CKRLNV++LVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        FALKEGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYA T  SPELKT T
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

A0A6J1I390 uncharacterized protein LOC1114695156.0e-7493.84Show/hide
Query:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
        MLNIATT CKRLNV++LVTNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL
Subjt:  MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTL

Query:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKT
        FALKEGCVKFEKHKLSGRKWVH+IPKEGHVLHPVYA T  SPELKT
Subjt:  FALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKT

SwissProt top hitse value%identityAlignment
A1URM7 50S ribosomal protein L274.2e-2466.27Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIP
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPG+ VGIGKDHTLF+L  G V F + K++ R +V VIP
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIP

A9IM57 50S ribosomal protein L271.0e-2571.08Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIP
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFAL EG V F++ K   R +V VIP
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIP

B4RZH4 50S ribosomal protein L271.1e-2467.07Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVI
        A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFALK+G V+F+      RK+V ++
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVI

Q6G0T7 50S ribosomal protein L271.9e-2467.07Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVI
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPGD VGIGKDHTLFAL  G V F++ K + R +V V+
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVI

Q6G507 50S ribosomal protein L271.3e-2569.88Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIP
        A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFAL +G V F++ K + R +V VIP
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIP

Arabidopsis top hitse value%identityAlignment
AT2G16930.1 Ribosomal protein L27 family protein6.0e-5870.47Show/hide
Query:  LNIATTVCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT
        LN A ++C+R+++REL+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHT
Subjt:  LNIATTVCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        LFALKEG V+FEK K++GRKW+HV P  GHVLHP+Y   + +   K  T
Subjt:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

AT2G16930.2 Ribosomal protein L27 family protein6.0e-5870.47Show/hide
Query:  LNIATTVCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT
        LN A ++C+R+++REL+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHT
Subjt:  LNIATTVCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        LFALKEG V+FEK K++GRKW+HV P  GHVLHP+Y   + +   K  T
Subjt:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

AT2G16930.3 Ribosomal protein L27 family protein6.0e-5870.47Show/hide
Query:  LNIATTVCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT
        LN A ++C+R+++REL+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHT
Subjt:  LNIATTVCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT
        LFALKEG V+FEK K++GRKW+HV P  GHVLHP+Y   + +   K  T
Subjt:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT

AT5G15220.1 Ribosomal protein L27 family protein5.4e-5972.19Show/hide
Query:  LNIATTVCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT
        LN A ++C+R+++REL+T VP Y  SS SDG++ GLSL+F+RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHT
Subjt:  LNIATTVCKRLNVRELVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHT

Query:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVY--AMTSTSPELKTTT
        LFALKEG V+FEK K++GRKW+HV P  GHVLHP+Y  A  + S +LKT +
Subjt:  LFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPVY--AMTSTSPELKTTT

AT5G40950.1 ribosomal protein large subunit 277.6e-2161.18Show/hide
Query:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIPKE
        A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+L +G VKFEK     RK + V P+E
Subjt:  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIPKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATTGCGACCACGGTTTGCAAGCGACTGAATGTCAGGGAATTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTT
ATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCAAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTC
CTGGTAACATTATCGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTC
GAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAATGACTTCTACTTCCCCAGAGTTGAAGACAAC
AACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATTGCGACCACGGTTTGCAAGCGACTGAATGTCAGGGAATTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGGTTAAGCTT
ATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCAAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTC
CTGGTAACATTATCGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTC
GAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGCAATGACTTCTACTTCCCCAGAGTTGAAGACAAC
AACATGA
Protein sequenceShow/hide protein sequence
MLNIATTVCKRLNVRELVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKF
EKHKLSGRKWVHVIPKEGHVLHPVYAMTSTSPELKTTT