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HG10018767 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018767
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein, mitochondrial
Genome locationChr04:8207204..8207425
RNA-Seq ExpressionHG10018767
SyntenyHG10018767
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136798.1 pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Cucumis sativus]1.3e-2689.04Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL
        MVKEG F++ALETCRE IKRRWVPPFEAME LVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSW K+EAAL L
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL

XP_008443376.1 PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucumis melo]6.2e-2684.93Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL
        MVKEG FDLAL+TCR+++KRRWVPPFE ME LVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSW K+EA L+L
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL

XP_022934713.1 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucurbita moschata]1.8e-2587.67Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL
        MVKEG FDLALETCREIIKRRWVPPFEAME LVRGLV +SKVEEAKEVVEK KK LKGPA+DSW K+EAALSL
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL

XP_022983789.1 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X1 [Cucurbita maxima]1.6e-2690.41Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL
        MVKEG FDLALETCREIIKRRWVPPFEAME LVRGLV +SKVEEAKEVVEKMKK LKGPAVDSW K+EAALSL
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL

XP_038906046.1 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Benincasa hispida]5.6e-2790.41Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL
        MVKEG FDLALETCREIIKRRWVPPFEAME LVRGLV MS++EEAKEVVEKMKKRLKGPAVDSW K+EAALSL
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL

TrEMBL top hitse value%identityAlignment
A0A0A0LF76 Uncharacterized protein6.1e-2789.04Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL
        MVKEG F++ALETCRE IKRRWVPPFEAME LVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSW K+EAAL L
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL

A0A1S3B7X6 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like3.0e-2684.93Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL
        MVKEG FDLAL+TCR+++KRRWVPPFE ME LVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSW K+EA L+L
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL

A0A5A7UGZ0 Pentatricopeptide repeat-containing protein3.0e-2684.93Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL
        MVKEG FDLAL+TCR+++KRRWVPPFE ME LVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSW K+EA L+L
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL

A0A6J1F8F5 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like8.8e-2687.67Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL
        MVKEG FDLALETCREIIKRRWVPPFEAME LVRGLV +SKVEEAKEVVEK KK LKGPA+DSW K+EAALSL
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL

A0A6J1J8H6 pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X17.9e-2790.41Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL
        MVKEG FDLALETCREIIKRRWVPPFEAME LVRGLV +SKVEEAKEVVEKMKK LKGPAVDSW K+EAALSL
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL

SwissProt top hitse value%identityAlignment
Q8GW57 Pentatricopeptide repeat-containing protein At1g80150, mitochondrial4.8e-0532.14Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRL
        + K G FDLA   C++ ++++W P  + +E+L++GLV   ++++AK ++E + +R+
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRL

Q8LE47 Pentatricopeptide repeat-containing protein At1g61870, mitochondrial1.2e-0845.07Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAAL
        + K G F+ AL  C+E +++ WVP F  M+ LV GL   SKVEEAKE++ ++K++     V+ W +VEAAL
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAAL

Q9SAB4 Pentatricopeptide repeat-containing protein At1g11630, mitochondrial2.5e-0946.58Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL
        + K G F+ AL  CRE +++ WVP F  M+ LV GL + SKV+EAKE++  +K++     VD W +VEAAL L
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL

Arabidopsis top hitse value%identityAlignment
AT1G11630.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.8e-1046.58Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL
        + K G F+ AL  CRE +++ WVP F  M+ LV GL + SKV+EAKE++  +K++     VD W +VEAAL L
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL

AT1G61870.1 pentatricopeptide repeat 3368.7e-1045.07Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAAL
        + K G F+ AL  C+E +++ WVP F  M+ LV GL   SKVEEAKE++ ++K++     V+ W +VEAAL
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAAL

AT1G80150.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.4e-0632.14Show/hide
Query:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRL
        + K G FDLA   C++ ++++W P  + +E+L++GLV   ++++AK ++E + +R+
Subjt:  MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAAGGAGGGGGCGTTCGATTTGGCGTTGGAGACATGTAGAGAGATCATAAAGAGGAGATGGGTTCCTCCATTTGAGGCAATGGAGGTCCTGGTTCGTGGGTTGGT
GGCTATGTCGAAGGTTGAAGAGGCAAAAGAGGTTGTTGAAAAGATGAAGAAGAGGCTCAAAGGGCCTGCTGTGGATTCTTGGGTTAAAGTTGAAGCTGCTCTTTCTCTGT
AG
mRNA sequenceShow/hide mRNA sequence
ATGGTTAAGGAGGGGGCGTTCGATTTGGCGTTGGAGACATGTAGAGAGATCATAAAGAGGAGATGGGTTCCTCCATTTGAGGCAATGGAGGTCCTGGTTCGTGGGTTGGT
GGCTATGTCGAAGGTTGAAGAGGCAAAAGAGGTTGTTGAAAAGATGAAGAAGAGGCTCAAAGGGCCTGCTGTGGATTCTTGGGTTAAAGTTGAAGCTGCTCTTTCTCTGT
AG
Protein sequenceShow/hide protein sequence
MVKEGAFDLALETCREIIKRRWVPPFEAMEVLVRGLVAMSKVEEAKEVVEKMKKRLKGPAVDSWVKVEAALSL