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HG10018793 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018793
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotransposon protein
Genome locationChr04:8637621..8637968
RNA-Seq ExpressionHG10018793
SyntenyHG10018793
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]8.6e-0634.78Show/hide
Query:  STNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV
        S+  K+K  S H EM+    +  +    Q++ I  WP+   A E   R E    L  +P+L ++DR +LM I+F+S E    FLS+P +LK+
Subjt:  STNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.3e-0636.96Show/hide
Query:  STNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV
        S+  K+K+ S H E +    + I+    Q++ IA+WP+   A E   R E    L  +PEL +RDR +L+ I+F+S E    FLS+P E K+
Subjt:  STNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]6.6e-0635.24Show/hide
Query:  PTHTTSADALGATSSTNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSV
        P   TS   +G TSS   K+K     +EM+    T + MQT  +E++A+WP+     +  RRK   D L ++P L   D +RL+ I+  + + + SFL V
Subjt:  PTHTTSADALGATSSTNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSV

Query:  PMELK
        P+E K
Subjt:  PMELK

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]1.1e-0532.65Show/hide
Query:  TTSADALGATSSTNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVP
        +T   ++ A SS   K+K  S   EM+    +T++MQ+T + R+ASW +  Y LE  RRKE  + +  +  L   D++  +D++    + T  FL+VP
Subjt:  TTSADALGATSSTNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVP

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]2.7e-0733.33Show/hide
Query:  GATSSTNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV
        G  S    K+K    H+E++  F   +D    Q++ IA W +  +A E   R +  + L  +P+L T+ +M+ M+IIF++  NT SFLS+P ++K+
Subjt:  GATSSTNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV

TrEMBL top hitse value%identityAlignment
A0A5A7SQU2 Putative nuclease HARBI11.1e-0636.96Show/hide
Query:  STNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV
        S+  K+K+ S H E +    + I+    Q++ IA+WP+   A E   R E    L  +PEL +RDR +L+ I+F+S E    FLS+P E K+
Subjt:  STNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV

A0A5A7U0H7 Retrotransposon protein6.0e-0533.7Show/hide
Query:  STNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV
        S+  K+K  S   E +    + ++    Q++ IA WP+   A+E   R +    L  +P+L ++DR +LM I+F+S E    FLS+P ELK+
Subjt:  STNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV

A0A5D3BZU3 Retrotransposon protein4.2e-0634.78Show/hide
Query:  STNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV
        S+  K+K  S H EM+    +  +    Q++ I  WP+   A E   R E    L  +P+L ++DR +LM I+F+S E    FLS+P +LK+
Subjt:  STNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV

A0A5D3CT52 Retrotransposon protein1.6e-0535.87Show/hide
Query:  STNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV
        S+  K+K  S H E +    + ++    Q++ IA+WP+     E   R E    L  + EL +RDR +LM I+F S E    FLS+P+ELK+
Subjt:  STNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPMELKV

A0A6J1DW73 uncharacterized protein LOC1110250183.2e-0635.24Show/hide
Query:  PTHTTSADALGATSSTNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSV
        P   TS   +G TSS   K+K     +EM+    T + MQT  +E++A+WP+     +  RRK   D L ++P L   D +RL+ I+  + + + SFL V
Subjt:  PTHTTSADALGATSSTNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSV

Query:  PMELK
        P+E K
Subjt:  PMELK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTACGATGAAGCAATGTCCAACACACACCACTAGTGCAGACGCCCTGGGAGCAACATCCTCAACAAACAGGAAACAAAAAGAAATGTCATTGCACACTGAAATGCT
GCATTTTTTTGGCACAACCATAGACATGCAAACAACCCAAGTTGAGAGGATTGCATCATGGCCTGAAGCAAACTATGCTTTGGAGTCTAGACGACGAAAAGAAGCGGCGG
ACATTCTAATTAAGTTACCAGAGTTGTCAACACGAGACAGGATGAGGCTCATGGATATAATATTTAAAAGTCAAGAAAATACCCACAGTTTCTTATCCGTCCCAATGGAG
TTGAAAGTTTTCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTACGATGAAGCAATGTCCAACACACACCACTAGTGCAGACGCCCTGGGAGCAACATCCTCAACAAACAGGAAACAAAAAGAAATGTCATTGCACACTGAAATGCT
GCATTTTTTTGGCACAACCATAGACATGCAAACAACCCAAGTTGAGAGGATTGCATCATGGCCTGAAGCAAACTATGCTTTGGAGTCTAGACGACGAAAAGAAGCGGCGG
ACATTCTAATTAAGTTACCAGAGTTGTCAACACGAGACAGGATGAGGCTCATGGATATAATATTTAAAAGTCAAGAAAATACCCACAGTTTCTTATCCGTCCCAATGGAG
TTGAAAGTTTTCCATTGA
Protein sequenceShow/hide protein sequence
MCTMKQCPTHTTSADALGATSSTNRKQKEMSLHTEMLHFFGTTIDMQTTQVERIASWPEANYALESRRRKEAADILIKLPELSTRDRMRLMDIIFKSQENTHSFLSVPME
LKVFH