; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10018801 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018801
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRetrotransposon gag protein
Genome locationChr04:8837430..8845317
RNA-Seq ExpressionHG10018801
SyntenyHG10018801
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.4e-1661.9Show/hide
Query:  ERDRDSTRAIP--KATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM
        ++ R ST A    K T    + E   LKAK FHEEN+  KIHSRVPSRMKRKLSVDIN+EG LTVKP+ II TNP NEGD+K++
Subjt:  ERDRDSTRAIP--KATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM

KAA0059024.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.7e-1660.47Show/hide
Query:  ERDRDSTRAIP--KATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVMMK
        ++DR ST A    K T    + E   LKAK F EEN+  KIHSRVPSRMKRKLSVDIN+EG LTVKP+ II TNPTNEGD++++++
Subjt:  ERDRDSTRAIP--KATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVMMK

KAA0060302.1 gag protease polyprotein [Cucumis melo var. makuwa]1.7e-1560Show/hide
Query:  AKEERDRDSTRAIPKATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM
        +K+ R   S     K T    + E   LKAK FHEEN+  KIHSRVPSRMKRKLSVDIN+EG LTVKP+ II TNP NEGD+K++
Subjt:  AKEERDRDSTRAIPKATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM

KAA0061331.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.6e-1661.9Show/hide
Query:  ERDRDSTRAIP--KATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM
        ++DR +T A    K T    + E   LKAK FHEEN+  KIHS VPSRMKRKLSVDIN+EG LTVKP+ II TNPTNEGD+K++
Subjt:  ERDRDSTRAIP--KATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM

TYK30263.1 gag protease polyprotein [Cucumis melo var. makuwa]1.5e-1663.1Show/hide
Query:  ERDRDSTRAI--PKATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM
        ++DR ST A   PK T    + E   LKAKLFHEEN   KIHSRVPSRMKRKLSVDIN+E  L VKP+ II TNP NEGD+K++
Subjt:  ERDRDSTRAI--PKATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein3.6e-1661.9Show/hide
Query:  ERDRDSTRAIP--KATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM
        ++ R ST A    K T    + E   LKAK FHEEN+  KIHSRVPSRMKRKLSVDIN+EG LTVKP+ II TNP NEGD+K++
Subjt:  ERDRDSTRAIP--KATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM

A0A5A7UV73 Retrotransposon gag protein2.8e-1660.47Show/hide
Query:  ERDRDSTRAIP--KATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVMMK
        ++DR ST A    K T    + E   LKAK F EEN+  KIHSRVPSRMKRKLSVDIN+EG LTVKP+ II TNPTNEGD++++++
Subjt:  ERDRDSTRAIP--KATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVMMK

A0A5A7UWS9 Gag protease polyprotein8.0e-1660Show/hide
Query:  AKEERDRDSTRAIPKATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM
        +K+ R   S     K T    + E   LKAK FHEEN+  KIHSRVPSRMKRKLSVDIN+EG LTVKP+ II TNP NEGD+K++
Subjt:  AKEERDRDSTRAIPKATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM

A0A5A7V6H5 Ty3-gypsy retrotransposon protein1.2e-1661.9Show/hide
Query:  ERDRDSTRAIP--KATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM
        ++DR +T A    K T    + E   LKAK FHEEN+  KIHS VPSRMKRKLSVDIN+EG LTVKP+ II TNPTNEGD+K++
Subjt:  ERDRDSTRAIP--KATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM

A0A5D3E2D7 Gag protease polyprotein7.2e-1763.1Show/hide
Query:  ERDRDSTRAI--PKATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM
        ++DR ST A   PK T    + E   LKAKLFHEEN   KIHSRVPSRMKRKLSVDIN+E  L VKP+ II TNP NEGD+K++
Subjt:  ERDRDSTRAI--PKATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCGAGTATTAAAGCCAAAGAGGAACGGGACAGAGACTCTACCAGGGCAATTCCAAAAGCTACACCTGCTGTAACCGAGGGAGAACAAATCGAGCTTAAGGCTAA
ATTATTTCATGAAGAAAACAACAAGAAGAAGATTCATAGTCGTGTCCCTTCACGCATGAAGAGGAAGTTATCTGTTGACATAAATTCAGAAGGTTTCTTGACGGTGAAAC
CAAAACTCATCATATTGACGAATCCTACAAATGAAGGAGACGACAAAGTCATGATGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCGAGTATTAAAGCCAAAGAGGAACGGGACAGAGACTCTACCAGGGCAATTCCAAAAGCTACACCTGCTGTAACCGAGGGAGAACAAATCGAGCTTAAGGCTAA
ATTATTTCATGAAGAAAACAACAAGAAGAAGATTCATAGTCGTGTCCCTTCACGCATGAAGAGGAAGTTATCTGTTGACATAAATTCAGAAGGTTTCTTGACGGTGAAAC
CAAAACTCATCATATTGACGAATCCTACAAATGAAGGAGACGACAAAGTCATGATGAAATAA
Protein sequenceShow/hide protein sequence
MKASIKAKEERDRDSTRAIPKATPAVTEGEQIELKAKLFHEENNKKKIHSRVPSRMKRKLSVDINSEGFLTVKPKLIILTNPTNEGDDKVMMK