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HG10018834 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10018834
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMads box protein, putative
Genome locationChr04:9425147..9425344
RNA-Seq ExpressionHG10018834
SyntenyHG10018834
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022971944.1 MADS-box protein JOINTLESS-like isoform X2 [Cucurbita maxima]8.3e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

XP_023511719.1 MADS-box protein JOINTLESS-like [Cucurbita pepo subsp. pepo]8.3e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

XP_031744925.1 MADS-box protein SVP isoform X2 [Cucumis sativus]8.3e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

XP_038886864.1 MADS-box protein SVP-like isoform X3 [Benincasa hispida]8.3e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

XP_038886865.1 MADS-box protein SVP-like isoform X4 [Benincasa hispida]8.3e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

TrEMBL top hitse value%identityAlignment
A0A6J1GJY0 MADS-box protein JOINTLESS-like isoform X14.0e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

A0A6J1GL18 MADS-box protein JOINTLESS-like isoform X24.0e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

A0A6J1I4L2 MADS-box protein JOINTLESS-like isoform X34.0e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

A0A6J1I8F3 MADS-box protein JOINTLESS-like isoform X14.0e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

A0A6J1IA12 MADS-box protein JOINTLESS-like isoform X24.0e-22100Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

SwissProt top hitse value%identityAlignment
O82794 MADS-box protein AGL245.8e-1868.85Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASSR
        M R+KI+IKKIDNI ARQV FSKRR+G+FKKA EL++LCDA++ L++FSA+GKLF+++SSR
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASSR

Q5K4R0 MADS-box transcription factor 473.7e-1772.41Show/hide
Query:  RKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        R++I I++IDN+AARQV FSKRR+GLFKKA+EL+ILCDAE+GL+VFSA+GKLF +AS+
Subjt:  RKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

Q6VAM4 MADS-box transcription factor 231.4e-1670Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        M R KI+IK+IDN  +RQV FSKRR GLFKKA+EL+ILCDAE+GLLVFS++ +L+D+ASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

Q9FUY6 MADS-box protein JOINTLESS3.4e-1871.67Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        M R+KIQIKKIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L++FS++GKLFDY+SS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

Q9FVC1 MADS-box protein SVP6.4e-1766.67Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L++FS++GKLF++ SS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

Arabidopsis top hitse value%identityAlignment
AT2G14210.1 AGAMOUS-like 446.5e-1766.67Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        M R KI I++IDN  +RQV FSKRR GL KKAKEL+ILCDAE+G+++FS++GKL+DYAS+
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

AT2G22540.1 K-box region and MADS-box transcription factor family protein4.5e-1866.67Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L++FS++GKLF++ SS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS

AT2G22540.2 K-box region and MADS-box transcription factor family protein2.2e-1769.64Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFD
        M R+KIQI+KIDN  ARQV FSKRR+GLFKKA+EL++LCDA++ L++FS++GKLFD
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFD

AT4G24540.1 AGAMOUS-like 244.1e-1968.85Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASSR
        M R+KI+IKKIDNI ARQV FSKRR+G+FKKA EL++LCDA++ L++FSA+GKLF+++SSR
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASSR

AT4G37940.1 AGAMOUS-like 212.2e-1770Show/hide
Query:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS
        M R KI I++ID+  +RQV FSKRRKGL KKAKELAILCDAE+GL++FS++GKL+D+ASS
Subjt:  MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGGAAGAAAATTCAGATCAAGAAGATTGACAACATAGCTGCAAGACAAGTTGCATTTTCAAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTAAAGAGCTTGCAAT
TCTTTGTGATGCTGAGATTGGCCTTCTTGTTTTTTCTGCTTCTGGGAAGCTCTTTGACTATGCAAGTTCAAGGTTTTCTCTCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAGGAAGAAAATTCAGATCAAGAAGATTGACAACATAGCTGCAAGACAAGTTGCATTTTCAAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTAAAGAGCTTGCAAT
TCTTTGTGATGCTGAGATTGGCCTTCTTGTTTTTTCTGCTTCTGGGAAGCTCTTTGACTATGCAAGTTCAAGGTTTTCTCTCTCTTAA
Protein sequenceShow/hide protein sequence
MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASSRFSLS